hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05294/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1673  ( 704 res)   mbg05294

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM_1    RNA recognition motif. (a.k.a. RRM, RBD, or     36.7    5.3e-07   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM_1      1/2     449   522 ..     1    74 []    30.5    4e-05
RRM_1      2/2     557   628 ..     1    74 []     6.2    0.045

Alignments of top-scoring domains:
RRM_1: domain 1 of 2, from 449 to 522: score 30.5, E = 4e-05
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrD.ttretgrskGfaF
                      +fVg+Lppd++e+++ + F+ fGp   ++ +++ ++++   +kG+aF
   mKIAA1673   449    VFVGGLPPDIDEDEITASFRRFGPL-IVDWPHKaESKSYFPPKGYAF 494  

                   VeFedeedAekAldalnGkelggrelrv<-*
                     F+de+++++ +da+ +   +   +     
   mKIAA1673   495 LLFQDESSVQALIDACIEEDGKLYLCVS    522  

RRM_1: domain 2 of 2, from 557 to 628: score 6.2, E = 0.045
                   *->lfVgNLppdtteedLkdlFsk.fGpiesikivrDttretgrskGfaF
                      +fVg+ p+ +   +L  +    +G++  + i +D  +e + +kG + 
   mKIAA1673   557    IFVGGVPRPLRAVELAMIMDRlYGGVCYAGIDTD--PELKYPKGAGR 601  

                   VeFedeedAekAldalnGkelggrelrv<-*
                   V F ++ +  +A++     +l   e+     
   mKIAA1673   602 VAFSNQQSYIAAIS-ARFVQLQHGEIDK    628  

//