hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbp/mbp00184/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1672 ( 828 res) mbp00184 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- efhand EF hand 98.6 1.2e-25 9 Dockerin_1 Dockerin type I repeat 13.2 0.97 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- efhand 1/9 79 107 .. 1 29 [] 15.0 1.8 Dockerin_1 1/1 88 108 .. 1 21 [] 13.2 0.97 efhand 2/9 221 249 .. 1 29 [] 20.1 0.054 efhand 3/9 402 430 .. 1 29 [] 7.4 19 efhand 4/9 509 537 .. 1 29 [] 12.9 4.8 efhand 5/9 545 573 .. 1 29 [] 0.1 1.2e+02 efhand 6/9 654 682 .. 1 29 [] 18.5 0.16 efhand 7/9 690 718 .. 1 29 [] 2.5 64 efhand 8/9 765 793 .. 1 29 [] 19.5 0.079 efhand 9/9 801 827 .. 1 29 [] 3.8 46 Alignments of top-scoring domains: efhand: domain 1 of 9, from 79 to 107: score 15.0, E = 1.8 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* ++ aF +D D+DG Is +f ++l+ l mKIAA1672 79 DVYSAFFRIDLDRDGIISMHDFHRLLQYL 107 Dockerin_1: domain 1 of 1, from 88 to 108: score 13.2, E = 0.97 *->DvNgDGkVnalDlallkkyll<-* D+++DG +++ D+ +l +yl mKIAA1672 88 DLDRDGIISMHDFHRLLQYLQ 108 efhand: domain 2 of 9, from 221 to 249: score 20.1, E = 0.054 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* e++++++ +D+ g G+I+++Ef++ l mKIAA1672 221 EFEKLWQNYDTEGRGYITYQEFLHRLGIR 249 efhand: domain 3 of 9, from 402 to 430: score 7.4, E = 19 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* l eaF+ +Dk G++ Ef ++l+++ mKIAA1672 402 ALVEAFSALDKVDTGFVKAMEFGDVLRSV 430 efhand: domain 4 of 9, from 509 to 537: score 12.9, E = 4.8 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* + + F+ fD+ ++ ++s++Ef++++++ mKIAA1672 509 TIVQEFENFDTLKSNTVSRDEFRSICTRH 537 efhand: domain 5 of 9, from 545 to 573: score 0.1, E = 1.2e+02 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* +++++++e+ ++ G++ +++f++ l+ mKIAA1672 545 QFDRLWSELPVNAKGRLKYQDFLSKLSIE 573 efhand: domain 6 of 9, from 654 to 682: score 18.5, E = 0.16 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* el + ke D+D+ G+Is Ef+a+++k+ mKIAA1672 654 ELLRECKEKDTDKQGTISAAEFLALVEKF 682 efhand: domain 7 of 9, from 690 to 718: score 2.5, E = 64 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* e ++++ ++D ++Gk + +f++ + l mKIAA1672 690 ESQQLIVKYDLKNNGKFAYCDFIQSCVLL 718 efhand: domain 8 of 9, from 765 to 793: score 19.5, E = 0.079 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* +++ Fk +Dk+g G +s+ +f+++l++ mKIAA1672 765 PMRRSFKTYDKNGTGLLSVADFRKVLRQY 793 efhand: domain 9 of 9, from 801 to 827: score 3.8, E = 46 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* e+ + + +Dk + kIs+++f++a+ l mKIAA1672 801 EFFHVLEYYDKSLSSKISYNDFLRAF--L 827 //