hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf01101/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1668  ( 883 res)   mpf01101

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CH       Calponin homology domain                        77.7    1.4e-18   1
LIM      Zinc-binding domain present in Lin-11, Isl-1    33.4    3.2e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CH         1/1      17   116 ..     1   100 []    77.7  1.4e-18
LIM        1/1     177   232 ..     1    52 []    33.4  3.2e-05

Alignments of top-scoring domains:
CH: domain 1 of 1, from 17 to 116: score 77.7, E = 1.4e-18
                   *->eeeallrWinsll......kvtnfssdlkDGvvLckLlnslsPagsv
                      ++ all W++++ ++ ++ ++ ++ss+++DG+++c+ l++++P ++ 
   mKIAA1668    17    PRGALLAWCRRQCegyrgvDIRDLSSSFRDGLAFCAILHRHRP-DLL 62   

                   dkkk..rfkkleNinlalsfaeklgafLGvgkvvlfdpeDlvegnenkkl
                   d+   ++++  eN +la+++aek+     +g++ l+dp+D+v ++   ++
   mKIAA1668    63 DFQSlsKENVFENNRLAFEVAEKE-----LGIPALLDPNDMVSMS--VPD 105  

                   ilgviwtLirl<-*
                    l+++++++++   
   mKIAA1668   106 CLSIMTYVSQY    116  

LIM: domain 1 of 1, from 177 to 232: score 33.4, E = 3.2e-05
                   *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLgg...tffekd
                       Ca+Cg+ +   +++ a+g+ +H +CF+C +C+ +L++++    +++
   mKIAA1668   177    ACAACGQRVHLVQRYLAEGRLYHRHCFRCRQCSSTLVPgsySSGPEE 223  

                   gklyC.kdc<-*
                   g++ C ++c   
   mKIAA1668   224 GTFVCaERC    232  

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