hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf01101/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1668  ( 883 res)   mpf01101

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CH       Calponin homology (CH) domain                  139.8      5e-38   1
LIM      LIM domain                                      23.1    0.00034   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CH         1/1      17   121 ..     1   121 []   139.8    5e-38
LIM        1/1     178   236 ..     1    62 []    23.1  0.00034

Alignments of top-scoring domains:
CH: domain 1 of 1, from 17 to 121: score 139.8, E = 5e-38
                   *->qekellrWinsvlagypgnkdtlPippvritnfftdwlkDGlaLcaL
                      ++ +ll+W++++++gy+g         v+i++++++++ DGla+ca+
   mKIAA1668    17    PRGALLAWCRRQCEGYRG---------VDIRDLSSSFR-DGLAFCAI 53   

                   lnklrPglidkkkvpslsrfdkleNlnlaldaaekeGlgiilvlidpeDi
                   l+++rP+l+d+    sls+++  eN +la+++aeke lgi + l+dp+D+
   mKIAA1668    54 LHRHRPDLLDFQ---SLSKENVFENNRLAFEVAEKE-LGI-PALLDPNDM 98   

                   vegnpdPDeklvltllwqLirrfq<-*
                   v++   PD+++++t+++q++++f    
   mKIAA1668    99 VSMSV-PDCLSIMTYVSQYYNHFT    121  

LIM: domain 1 of 1, from 178 to 236: score 23.1, E = 0.00034
                   *->CagCgkpIydrevvmrAlnkvwHpeCFrCavCgkpLtegdefye..k
                      Ca+Cg+ ++  ++   A ++ +H+ CFrC +C  +L +g+ + +++ 
   mKIAA1668   178    CAACGQRVHLVQRYL-AEGRLYHRHCFRCRQCSSTLVPGS-YSSgpE 222  

                   dgskelYC.kkDYyklfg<-*
                   +g   ++C ++  + + g   
   mKIAA1668   223 EG-T-FVCaER--CTRLG    236  

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