hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mie/mie39080/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1665  ( 115 res)   mie39080

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
RNA_pol_Rbc25 RNA polymerase III subunit Rpc25          208.2    1.2e-58   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
RNA_pol_Rbc25   1/1       1   112 [.     1   143 []   208.2  1.2e-58

Alignments of top-scoring domains:
RNA_pol_Rbc25: domain 1 of 1, from 1 to 112: score 208.2, E = 1.2e-58
                   *->PFvGEVltGkIkgCSrEGihVslLgFFDDIfIPkemLfepsvFeeeE
                                 kgCS EG+hVs LgFFDDI+IP+e+L++p++F+e+E
   mKIAA1665     1    -----------KGCSPEGVHVS-LGFFDDILIPPESLQQPAKFDEAE 35   

                   qaWvWeydeEDGeepteLYlDvgEeIRFRVeeevFvDisPkspkeakele
                   q+WvWey++E+G+  ++LY+D+gEeIRFRV +e FvD+sP +p+ a++++
   mKIAA1665    36 QVWVWEYETEEGA--HDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAAS 83   

                   eagdlyslreakesqaeeedeakekkpPYaLigScqedGLGlvSWW<-*
                   +                 ++e+  k++PY+L+gS++e+GLGl+SWW   
   mKIAA1665    84 S-----------------SEELPKKEAPYTLVGSISEPGLGLLSWW    112  

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