hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg02432/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1663 ( 348 res) mbg02432 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- btg1 tob/btg1 family 227.7 9.9e-64 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- btg1 1/1 4 109 .. 1 110 [] 227.7 9.9e-64 Alignments of top-scoring domains: btg1: domain 1 of 1, from 4 to 109: score 227.7, E = 9.9e-64 *->MkeEIaaaVsFitkllrkhnkLskrqvekFaekLtelLkekYknHWY M++EI +a++Fi+++l +nkL++r+ + F+e+L++lL +kY++HWY mKIAA1663 4 MQLEIKVALNFIISYL--YNKLPRRRADLFGEELERLLRKKYEGHWY 48 PEKPyKGsgyRCIRINkyqkvDPviekAckesgldidDLgrlLPkELTlW PEKP KGsg+RC++I+ + vDPv+e A+k+sgl +D++ + P EL++W mKIAA1663 49 PEKPLKGSGFRCVHIG--EVVDPVVELAAKRSGLAVEDVRANVPEELSVW 96 VDPfEVsyriGEk<-* +DPfEVsy+iGEk mKIAA1663 97 IDPFEVSYQIGEK 109 //