hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg02432/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1663  ( 348 res)   mbg02432

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTG      BTG family                                     223.3    3.7e-63   1
PAM2     Ataxin-2 C-terminal region                      49.9    5.6e-11   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTG        1/1       4   118 ..     1   121 []   223.3  3.7e-63
PAM2       1/2     131   148 ..     1    18 []    25.2   0.0015
PAM2       2/2     252   269 ..     1    18 []    24.8   0.0021

Alignments of top-scoring domains:
BTG: domain 1 of 1, from 4 to 118: score 223.3, E = 3.7e-63
                   *->MkeEIaaaVnFltrllrkkgkLprrrveiFaeeLeeiLfekYkgHWy
                      M+ EI++a+nF++++l++k  Lprrr   F+eeLe++L++kY+gHWy
   mKIAA1663     4    MQLEIKVALNFIISYLYNK--LPRRRADLFGEELERLLRKKYEGHWY 48   

                   PEkPsKGsaYRCIRINCkahkmDpviekAaaeSGlsiddLlelLPkELTl
                   PEkP KGs++RC +I+   + +Dpv+e Aa++SGl  +d++ + P+EL++
   mKIAA1663    49 PEKPLKGSGFRCVHIG---EVVDPVVELAAKRSGLAVEDVRANVPEELSV 95   

                   WVDPyEVSYRiGEkghpvcVlyfe<-*
                   W+DP+EVSY+iGEkg  v+Vly     
   mKIAA1663    96 WIDPFEVSYQIGEKG-VVKVLYLG    118  

PAM2: domain 1 of 2, from 131 to 148: score 25.2, E = 0.0015
                   *->kkkskLNPnAkEFVPssk<-*
                      ++ks++NP+A++FVP ++   
   mKIAA1663   131    EIKSSFNPDAQVFVPIGS    148  

PAM2: domain 2 of 2, from 252 to 269: score 24.8, E = 0.0021
                   *->kkkskLNPnAkEFVPssk<-*
                      ++ s+L+PnAkEFV+++    
   mKIAA1663   252    APQSQLSPNAKEFVYNGG    269  

//