hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg18106/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1650  ( 856 res)   mbg18106

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SAM      Sterile alpha motif.                            75.9      5e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SAM        1/1     790   856 .]     1    67 []    75.9    5e-18

Alignments of top-scoring domains:
SAM: domain 1 of 1, from 790 to 856: score 75.9, E = 5e-18
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                         ws  +V++WLesi l++++d F++++i g++l++lt  ed  el
   mKIAA1650   790    LQlWSKFDVGDWLESIHLGEHRDRFEDHEIEGAHLPALT-KEDFVEL 835  

                   GitllGhRkkIlsaiqklkeq<-*
                   G+t++GhR  I +a+++l  +   
   mKIAA1650   836 GVTRVGHRMNIERALRQLDGS    856  

//