hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg18106/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1650  ( 856 res)   mbg18106

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SAM_1    SAM domain (Sterile alpha motif)                89.3    7.6e-23   1
SAM_2    SAM domain (Sterile alpha motif)                57.2    3.6e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SAM_1      1/1     791   854 ..     1    66 []    89.3  7.6e-23
SAM_2      1/1     790   856 .]     1    72 []    57.2  3.6e-13

Alignments of top-scoring domains:
SAM_1: domain 1 of 1, from 791 to 854: score 89.3, E = 7.6e-23
                   *->dgwsvesVgeWLesigllgqYidnFlaagyidgdtllqlteeDLedl
                      + ws ++Vg+WLesi+l g+++d F + ++i g +l  lt+eD+++l
   mKIAA1650   791    QLWSKFDVGDWLESIHL-GEHRDRF-EDHEIEGAHLPALTKEDFVEL 835  

                   GvtllGHrkkIlssIqgLk<-*
                   Gvt++GHr+ I +++++L    
   mKIAA1650   836 GVTRVGHRMNIERALRQLD    854  

SAM_2: domain 1 of 1, from 790 to 856: score 57.2, E = 3.6e-13
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                         ws  +v++WLesi+l g+++d F+d++i+g  +l + lt ed  
   mKIAA1650   790    LQLWSKFDVGDWLESIHL-GEHRDRFEDHEIEG-AHL-PALTKEDF- 832  

                   klalGitsvghRkkilskiqelkqq<-*
                     +lG+t vghR  i +++ +l ++   
   mKIAA1650   833 V-ELGVTRVGHRMNIERALRQLDGS    856  

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