hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msh/msh29358/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1649  ( 453 res)   msh29358

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM      RNA recognition motif                           51.9    8.5e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM        1/1     314   380 ..     1   121 []    51.9  8.5e-11

Alignments of top-scoring domains:
RRM: domain 1 of 1, from 314 to 380: score 51.9, E = 8.5e-11
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +  V NL  +p vteed+ elF                +G ++++r+
   mKIAA1649   314    KMTVNNL--HPRVTEEDIVELF--------------CVCGALKRARL 344  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   v+                             G a V F  ++dA  A   
   mKIAA1649   345 VHP----------------------------GVAEVVFVKKDDAITA--Y 364  

                   ealnaskGkeledgGrptlglrVe<-*
                   +++n   ++ l  +G+p   ++++   
   mKIAA1649   365 KKYN---NRCL--DGQP---MKCN    380  

//