hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msh/msh29358/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1649  ( 453 res)   msh29358

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM_1    RNA recognition motif. (a.k.a. RRM, RBD, or     44.0    3.4e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM_1      1/1     315   379 ..     1    74 []    44.0  3.4e-09

Alignments of top-scoring domains:
RRM_1: domain 1 of 1, from 315 to 379: score 44.0, E = 3.4e-09
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                        V NL+p +teed+ +lF  +G  +++++v+          G+a V
   mKIAA1649   315    MTVNNLHPRVTEEDIVELFCVCGALKRARLVH---------PGVAEV 352  

                   eFedeedAekAldalnGkelggrelrv<-*
                    F +++dA  A +++n++ l+g ++++   
   mKIAA1649   353 VFVKKDDAITAYKKYNNRCLDGQPMKC    379  

//