hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file: /cdna4/rodent/full/goal/mfj/mfj18213/w3open/interpro/cnk_1/seq.in
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Query: mKIAA1645 ( 384 res) mfj18213
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WD40 WD40 repeats 124.2 1.4e-32 6
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WD40 1/6 66 110 .. 1 46 [] 24.1 0.02
WD40 2/6 113 153 .. 1 46 [] 20.5 0.24
WD40 3/6 204 251 .. 1 46 [] 3.1 1.6e+02
WD40 4/6 254 293 .. 1 46 [] 17.5 0.84
WD40 5/6 296 338 .. 1 46 [] 17.5 0.82
WD40 6/6 341 379 .. 1 46 [] 41.6 1.1e-07
Alignments of top-scoring domains:
WD40: domain 1 of 6, from 66 to 110: score 24.1, E = 0.02
*->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
++ + ++l+g ++ +V+++ f+p +++ ++ ll+sgs++g +++W
mKIAA1645 66 PpGPRFVLRGTQS--AVNTLHFCPPSQA-AGNPLLFSGSqNGLVHIW 109
d<-*
+
mKIAA1645 110 S 110
WD40: domain 2 of 6, from 113 to 153: score 20.5, E = 0.24
*->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
t++ + tl+gH g ++V ++ p g ++l+s ++D ++lW
mKIAA1645 113 TrRIVTTLNGHGG-QGVIWLKTLPQG------HQLLSQGrDLRLCLW 152
d<-*
d
mKIAA1645 153 D 153
WD40: domain 3 of 6, from 204 to 251: score 3.1, E = 1.6e+02
*->t.kllrtlk....gHtgespVtsvafspdggssdspnllasgs.Dgt
+++ ++tlk++ ++ g ++ ++++s ll++g +Dg+
mKIAA1645 204 SkTSVCTLKpeadARPG--MPMCLGLWQTNSS--LRPLLLAGYeDGS 246
irlWd<-*
+ lWd
mKIAA1645 247 VTLWD 251
WD40: domain 4 of 6, from 254 to 293: score 17.5, E = 0.84
*->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
++k+++ +++H+ pV +++f++ +sgs + + +W
mKIAA1645 254 ErKVCSQITCHEE--PVMGLDFDSQK------AKGISGSaGKVLAVW 292
d<-*
+
mKIAA1645 293 S 293
WD40: domain 5 of 6, from 296 to 338: score 17.5, E = 0.82
*->t.kllrtlkgHtge.spVtsvafspdggssdspnllasgs.Dgtirl
+++ l++ k H+ ++ ++ v++ pd+ ++la++++D+ ir+
mKIAA1645 296 DqQSLQVKKTHELTnPGIAEVTIRPDH------KILATAGwDHRIRV 336
Wd<-*
++
mKIAA1645 337 FH 338
WD40: domain 6 of 6, from 341 to 379: score 41.6, E = 1.1e-07
*->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
t k+l++l H++ pV++vaf dg lla+gs+D i +W
mKIAA1645 341 TmKPLAVLAFHSA--PVYCVAFAADG-------LLAAGSkDQRISIW 378
d<-*
+
mKIAA1645 379 S 379
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