hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mfj/mfj18213/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1645 ( 384 res) mfj18213 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- WD40 WD40 repeats 124.2 1.4e-32 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- WD40 1/6 66 110 .. 1 46 [] 24.1 0.02 WD40 2/6 113 153 .. 1 46 [] 20.5 0.24 WD40 3/6 204 251 .. 1 46 [] 3.1 1.6e+02 WD40 4/6 254 293 .. 1 46 [] 17.5 0.84 WD40 5/6 296 338 .. 1 46 [] 17.5 0.82 WD40 6/6 341 379 .. 1 46 [] 41.6 1.1e-07 Alignments of top-scoring domains: WD40: domain 1 of 6, from 66 to 110: score 24.1, E = 0.02 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++ + ++l+g ++ +V+++ f+p +++ ++ ll+sgs++g +++W mKIAA1645 66 PpGPRFVLRGTQS--AVNTLHFCPPSQA-AGNPLLFSGSqNGLVHIW 109 d<-* + mKIAA1645 110 S 110 WD40: domain 2 of 6, from 113 to 153: score 20.5, E = 0.24 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t++ + tl+gH g ++V ++ p g ++l+s ++D ++lW mKIAA1645 113 TrRIVTTLNGHGG-QGVIWLKTLPQG------HQLLSQGrDLRLCLW 152 d<-* d mKIAA1645 153 D 153 WD40: domain 3 of 6, from 204 to 251: score 3.1, E = 1.6e+02 *->t.kllrtlk....gHtgespVtsvafspdggssdspnllasgs.Dgt +++ ++tlk++ ++ g ++ ++++s ll++g +Dg+ mKIAA1645 204 SkTSVCTLKpeadARPG--MPMCLGLWQTNSS--LRPLLLAGYeDGS 246 irlWd<-* + lWd mKIAA1645 247 VTLWD 251 WD40: domain 4 of 6, from 254 to 293: score 17.5, E = 0.84 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++k+++ +++H+ pV +++f++ +sgs + + +W mKIAA1645 254 ErKVCSQITCHEE--PVMGLDFDSQK------AKGISGSaGKVLAVW 292 d<-* + mKIAA1645 293 S 293 WD40: domain 5 of 6, from 296 to 338: score 17.5, E = 0.82 *->t.kllrtlkgHtge.spVtsvafspdggssdspnllasgs.Dgtirl +++ l++ k H+ ++ ++ v++ pd+ ++la++++D+ ir+ mKIAA1645 296 DqQSLQVKKTHELTnPGIAEVTIRPDH------KILATAGwDHRIRV 336 Wd<-* ++ mKIAA1645 337 FH 338 WD40: domain 6 of 6, from 341 to 379: score 41.6, E = 1.1e-07 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t k+l++l H++ pV++vaf dg lla+gs+D i +W mKIAA1645 341 TmKPLAVLAFHSA--PVYCVAFAADG-------LLAAGSkDQRISIW 378 d<-* + mKIAA1645 379 S 379 //