hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj18213/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1645  ( 384 res)   mfj18213

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                       104.6    1.9e-27   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/6      68   110 ..     1    38 []    27.5   0.0003
WD40       2/6     115   153 ..     1    38 []     7.5       24
WD40       3/6     210   251 ..     1    38 []     2.8       93
WD40       4/6     256   293 ..     1    38 []    12.3      6.1
WD40       5/6     301   338 ..     1    38 []    16.7     0.54
WD40       6/6     343   379 ..     1    38 []    37.7  2.6e-07

Alignments of top-scoring domains:
WD40: domain 1 of 6, from 68 to 110: score 27.5, E = 0.0003
                   *->eclavl.gHtspVtcvafspd....sgpllasgSrDgtikiWd<-*
                       +  vl+g +s+V+ + f+p++ +++ pll+sgS +g ++iW+   
   mKIAA1645    68    GPRFVLrGTQSAVNTLHFCPPsqaaGNPLLFSGSQNGLVHIWS    110  

WD40: domain 2 of 6, from 115 to 153: score 7.5, E = 24
                   *->eclavl..gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        +++l+++   +V  ++  p  g++l+s +rD  +++Wd   
   mKIAA1645   115    RIVTTLngHGGQGVIWLKTLPQ-GHQLLSQGRDLRLCLWD    153  

WD40: domain 3 of 6, from 210 to 251: score 2.8, E = 93
                   *->eclavl.gHtspVtcvafspd...sgpllasgSrDgtikiWd<-*
                      +++ + ++  +  +c+   + +++ +pll+ g +Dg++ +Wd   
   mKIAA1645   210    TLKPEAdARPGMPMCLGLWQTnssLRPLLLAGYEDGSVTLWD    251  

WD40: domain 4 of 6, from 256 to 293: score 12.3, E = 6.1
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++ + ++ H+ pV+ ++f+       +sgS+ + + +W+   
   mKIAA1645   256    KVCSQItCHEEPVMGLDFDSQ-KAKGISGSAGKVLAVWS    293  

WD40: domain 5 of 6, from 301 to 338: score 16.7, E = 0.54
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      +++++++  + ++  v + pd  ++la++++D+ i++++   
   mKIAA1645   301    QVKKTHeLTNPGIAEVTIRPD-HKILATAGWDHRIRVFH    338  

WD40: domain 6 of 6, from 343 to 379: score 37.7, E = 2.6e-07
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++lavl  H++pV+cvaf+ d   lla gS D  i iW+   
   mKIAA1645   343    KPLAVLaFHSAPVYCVAFAAD--GLLAAGSKDQRISIWS    379  

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