hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg16650/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1634  ( 1170 res)   mbg16650

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PDZ      Domain present in PSD-95, Dlg, and ZO-1/2.     333.5    1.4e-95   5
WW                                                       43.0      4e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WW         1/1       7    39 ..     1    34 []    43.0    4e-08
PDZ        1/5      85   161 ..     1    80 []    73.0  3.8e-17
PDZ        2/5     253   323 ..     1    80 []    48.7  7.5e-10
PDZ        3/5     401   477 ..     1    80 []    66.5  3.3e-15
PDZ        4/5     525   603 ..     1    80 []    80.7  1.8e-19
PDZ        5/5     694   768 ..     1    80 []    82.9  3.8e-20

Alignments of top-scoring domains:
WW: domain 1 of 1, from 7 to 39: score 43.0, E = 4e-08
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                       lP gWe+++dp+   +YY++h +++tq+e P+e   
   mKIAA1634     7    ELPYGWEKIEDPQ-YGTYYVDHLNQKTQFENPVE    39   

PDZ: domain 1 of 5, from 85 to 161: score 73.0, E = 3.8e-17
                   *->gglGfsivg......gifvssvvpGspAakaGrkslglLkvGDvIle
                       g+Gf+i g++++++ + v++v++++pAa++G+     + +GDvI+ 
   mKIAA1634    85    MGFGFTIIGgdrpdeFLQVKNVLKDGPAAQDGK-----IAPGDVIVD 126  

                   VNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +NG   v g th+++v++ +  +   v++ v Lt++Rg    
   mKIAA1634   127 ING-NCVLGHTHADVVQMFQLVP---VNQYVNLTLCRGY    161  

PDZ: domain 2 of 5, from 253 to 323: score 48.7, E = 7.5e-10
                   *->gglGfsivg...gifvssvvpGspAakaGrkslglLkvGDvIleVNG
                      +g+Gf i+++++g  v+ +++    +  G      L++GD+I e+  
   mKIAA1634   253    KGFGFAIADsptGQKVKMILD--SQWCQG------LQKGDIIKEIYH 291  

                   etsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                    ++v++lth+++v++lk+ +   vG  v L++lRgg   
   mKIAA1634   292 -QNVQNLTHLQVVEVLKQFP---VGADVPLLILRGG    323  

PDZ: domain 3 of 5, from 401 to 477: score 66.5, E = 3.3e-15
                   *->gglGfsivg......gifvssvvpGspAakaGrkslglLkvGDvIle
                       g+Gf++ g++++++ i++  ++p ++A+k+Gr     L++ D+++ 
   mKIAA1634   401    SGFGFRVLGgdgpdqSIYIGAIIPLGAAEKDGR-----LRAADELMC 442  

                   VNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   ++G ++v+g++h +++dl+  a ++g   +v Ltv+R+    
   mKIAA1634   443 IDG-IPVKGKSHKQVLDLMTTAARNG---HVLLTVRRKI    477  

PDZ: domain 4 of 5, from 525 to 603: score 80.7, E = 1.8e-19
                   *->gglGfsivg..........gifvssvvpGspAakaGrkslglLkvGD
                      +g+Gf i  ++++++++  ++ + +v++GspA+++G+     LkvGD
   mKIAA1634   525    EGFGFVILTskskpppgviPHKIGRVIDGSPADRCGG-----LKVGD 566  

                   vIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +I +VNG +s+ +l+h+ +v+l+k ag      +vtLtv+ ++   
   mKIAA1634   567 HISAVNG-QSIVDLSHDNIVQLIKDAGV-----TVTLTVVAEE    603  

PDZ: domain 5 of 5, from 694 to 768: score 82.9, E = 3.8e-20
                   *->gglGfsivg......gifvssvvpGspAakaGrkslglLkvGDvIle
                       g+Gfs++g+++ + g+f+ ++ +++pA k+Gr     ++vGD+I+e
   mKIAA1634   694    RGFGFSLRGgkeynmGLFILRLAEDGPAIKDGR-----IHVGDQIVE 735  

                   VNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +NG ++++g th +a++l+++ g+     kv L++++g    
   mKIAA1634   736 ING-EPTQGITHTRAIELIQAGGN-----KVLLLLRPGT    768  

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