hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg16650/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1634  ( 1170 res)   mbg16650

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PDZ      PDZ domain (Also known as DHR or GLGF)         215.8    6.2e-61   5
WW       WW domain                                       43.2    5.9e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WW         1/1       8    37 ..     1    30 []    43.2  5.9e-09
PDZ        1/5      77   158 ..     1    82 []    35.4  1.3e-06
PDZ        2/5     243   320 ..     1    82 []    10.9     0.15
PDZ        3/5     393   474 ..     1    82 []    40.8  3.1e-08
PDZ        4/5     516   600 ..     1    82 []    68.2  1.7e-16
PDZ        5/5     686   765 ..     1    82 []    74.4  2.3e-18

Alignments of top-scoring domains:
WW: domain 1 of 1, from 8 to 37: score 43.2, E = 5.9e-09
                   *->LppgWeerkdpdGrpYYyNhnTktTqWekP<-*
                      Lp gWe++ dp+  +YY++h +++Tq+e+P   
   mKIAA1634     8    LPYGWEKIEDPQYGTYYVDHLNQKTQFENP    37   

PDZ: domain 1 of 5, from 77 to 158: score 35.4, E = 1.3e-06
                   *->evtlekevkrgglGfsikggsdk...givvsevlpGsgaAeagGrLk
                        +l+k  +  g+Gf+i  g+d +++ + v++vl++ g+A+++G++ 
   mKIAA1634    77    RASLKK--STMGFGFTI-IGGDRpdeFLQVKNVLKD-GPAAQDGKIA 119  

                   eGDqIlsvNGqdvenlsheravla..lkgsggsevtLtil<-*
                   +GD+I+ +NG  v +++h+++v++ +l + ++  v Lt+    
   mKIAA1634   120 PGDVIVDINGNCVLGHTHADVVQMfqLVPVNQ-YVNLTLC    158  

PDZ: domain 2 of 5, from 243 to 320: score 10.9, E = 0.15
                   *->evtlekevkrgglGfsikggsdkgivvsevlpGsgaAeagGrLkeGD
                      +vt++   ++ g+Gf i+     g  v+ +l       ++G L++GD
   mKIAA1634   243    LVTIPLIKGPKGFGFAIADSPT-GQKVKMILDS---QWCQG-LQKGD 284  

                   qIlsvNGqdvenlsheravlalkgsgg.sevtLtil<-*
                   +I ++  q+v nl+h+++v++lk+ + +  v L+il   
   mKIAA1634   285 IIKEIYHQNVQNLTHLQVVEVLKQFPVgADVPLLIL    320  

PDZ: domain 3 of 5, from 393 to 474: score 40.8, E = 3.1e-08
                   *->evtlekevkrgglGfsikggsdk..givvsevlpGsgaAeagGrLke
                      +v l k  + +g+Gf++ gg+  +++i++  ++p  gaAe++GrL++
   mKIAA1634   393    DVFLRK--QESGFGFRVLGGDGPdqSIYIGAIIPL-GAAEKDGRLRA 436  

                   GDqIlsvNGqdvenlsheravlalkgsgg.sevtLtil<-*
                    D ++ ++G +v + sh ++ ++++ +  +++v Lt++   
   mKIAA1634   437 ADELMCIDGIPVKGKSHKQVLDLMTTAARnGHVLLTVR    474  

PDZ: domain 4 of 5, from 516 to 600: score 68.2, E = 1.7e-16
                   *->evtlekevkrgglGfsikggsdk......givvsevlpGsgaAeagG
                      +vtl++  +++g+Gf i   ++k++++  +  + +v+ Gs+a+ +gG
   mKIAA1634   516    DVTLQRK-ENEGFGFVILTSKSKpppgviPHKIGRVIDGSPADRCGG 561  

                   rLkeGDqIlsvNGqdvenlsheravlalkgsggsevtLtil<-*
                    Lk+GD I +vNGq++++lsh+ +v+++k++g  +vtLt+    
   mKIAA1634   562 -LKVGDHISAVNGQSIVDLSHDNIVQLIKDAGV-TVTLTVV    600  

PDZ: domain 5 of 5, from 686 to 765: score 74.4, E = 2.3e-18
                   *->evtlekevkrgglGfsikggsdk..givvsevlpGsgaAeagGrLke
                       v le+  ++ g+Gfs++gg++ + g+++ ++ ++ g+A ++Gr+++
   mKIAA1634   686    PVELER--GPRGFGFSLRGGKEYnmGLFILRLAED-GPAIKDGRIHV 729  

                   GDqIlsvNGqdvenlsheravlalkgsggsevtLtil<-*
                   GDqI+++NG+++ +++h ra+++++  g+ +v L+++   
   mKIAA1634   730 GDQIVEINGEPTQGITHTRAIELIQAGGN-KVLLLLR    765  

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