hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg00013/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1628 ( 1294 res) mbg00013 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- FN3 Fibronectin type 3 domain 219.5 3e-61 5 IG Immunoglobulin 114.7 1e-29 3 IGc2 Immunoglobulin C-2 Type 96.6 3e-24 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- IGc2 1/3 38 119 .. 1 56 [] 6.6 1.1 IG 1/3 32 131 .. 1 58 [] 13.6 5.6 IGc2 2/3 146 210 .. 1 56 [] 53.4 2.9e-11 IG 2/3 140 222 .. 1 58 [] 57.8 1.4e-12 IGc2 3/3 247 452 .. 1 56 [] 43.3 3.3e-08 IG 3/3 241 463 .. 1 58 [] 45.4 7.4e-09 FN3 1/5 469 552 .. 1 69 [] 55.2 8.4e-12 FN3 2/5 567 651 .. 1 69 [] 40.5 2.2e-07 FN3 3/5 671 767 .. 1 69 [] 44.2 1.7e-08 FN3 4/5 791 873 .. 1 69 [] 47.0 2.5e-09 FN3 5/5 889 973 .. 1 69 [] 49.3 5.1e-10 Alignments of top-scoring domains: IGc2: domain 1 of 3, from 38 to 119: score 6.6, E = 1.1 *->leGqsVtLtCp..asgdpvpn.ItWlk..gkplp............. + q+V+L C +a+++ p+++tW k++++ l++++ + ++++ mKIAA1628 38 GPEQAVVLDCTlgATAAGPPTrVTWSKdgDTVLEhenlhllpngslw 84 ...........sgstLtiknvsleDsGlYtCvArNsvg<-* +++ ++++++++ L+i v++ G Y+C+A ++ g mKIAA1628 85 lsspleqedsdDEEALRIWKVTE---GSYSCLAHSPLG 119 IG: domain 1 of 3, from 32 to 131: score 13.6, E = 5.6 *->pp.vtvkeGesvtLtC.as........titWy............... p +v + + v+L C+ + ++++++tW++++++ + + + mKIAA1628 32 PLqVILGPEQAVVLDCtLGataagpptRVTWSkdgdtvlehenlhll 78 .....................LtI.nvtpeDsesgGtYtCaat..sgsas ++++ +++ + ++++ L+I +v e G Y C a+++ g++ mKIAA1628 79 pngslwlsspleqedsddeeaLRIwKV-TE-----GSYSCLAHspLGVVA 122 seqgttLtVl<-* s q + ++ mKIAA1628 123 S-QVAVVKLA 131 IGc2: domain 2 of 3, from 146 to 210: score 53.4, E = 2.9e-11 *->leGqsVtLtCpasgdpvpnItWlk.gkplp........sgstLtikn +e ++++++C+ g p+p ItW k+ +p++++ + ++ L+i + mKIAA1628 146 EENGTARFECHTKGLPAPIITWEKdQVTVPeesrlitlPNGVLQILD 192 vsleDsGlYtCvArNsvg<-* v+ +D+G Y+CvA+Ns+ mKIAA1628 193 VQDSDAGSYRCVATNSAR 210 IG: domain 2 of 3, from 140 to 222: score 57.8, E = 1.4e-12 *->pp.vtvkeGesvtLtC.as.....titWy.................. p+++ v e ++++++C+ ++ + + itW +++ + + ++ + +++ mKIAA1628 140 PEsQIVEENGTARFEChTKglpapIITWEkdqvtvpeesrlitlpng 186 .LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* L+I +v+ +D+ G Y+C+at+++ + +s q++ LtV mKIAA1628 187 vLQIlDVQDSDA---GSYRCVATnsARQRFS-QEASLTVA 222 IGc2: domain 3 of 3, from 247 to 452: score 43.3, E = 3.3e-08 *->leGqsVtLtCpasgdpvpnItWlk.gkplp................. +GqsV+++C as+dp+p ++W+++g + ++ + ++++ + ++ mKIAA1628 247 VSGQSVVMECVASADPTPFVSWVRqGDQSKkelgiqtsgcdaalqgc 293 .................................................. +++ +++ +++ + ++++ ++ ++ +++ ++ ++ +++ ++ mKIAA1628 294 sgnlvvgegvegtvpaspssllllchqmeslsprmssfwagpiysspars 343 .................................................. ++ ++ + +++++ + ++ + +++ ++++++++++++++++ ++ mKIAA1628 344 lgtlesmsaeptsparvisplrllssecllpqpsrrrprrsrgrgpapra 393 ................................sgstLtiknvsleDsGlY + +++++++++ ++ +++++ ++ ++ + +++g++L i+ + l D+G+Y mKIAA1628 394 scagrpgshgprctgcttgsrcdpmgrvkvqgGGGSLVITQIGLQDAGYY 443 tCvArNsvg<-* +CvA+Ns+g mKIAA1628 444 QCVAENSAG 452 IG: domain 3 of 3, from 241 to 463: score 45.4, E = 7.4e-09 *->pp.vtvkeGesvtLtC.as.....titWy.................. p+++tv+ G+sv+++C as ++++ ++W ++++++++ + ++++ + mKIAA1628 241 PEnTTVVSGQSVVMECvASadptpFVSWVrqgdqskkelgiqtsgcd 287 .................................................. ++ +++ + + ++ + ++++ ++ + +++ ++ ++ mKIAA1628 288 aalqgcsgnlvvgegvegtvpaspssllllchqmeslsprmssfwagpiy 337 .................................................. +++ ++ ++ + + ++++ + ++ + ++ ++++++++++++++ mKIAA1628 338 ssparslgtlesmsaeptsparvisplrllssecllpqpsrrrprrsrgr 387 ..........................................LtI.nvtp ++ ++ + +++++++++ ++ +++++ ++ ++ + ++++++L+I+++ + mKIAA1628 388 gpaprascagrpgshgprctgcttgsrcdpmgrvkvqggggsLVItQIGL 437 eDsesgGtYtCaat..sgsasseqgttLtVl<-* +D+ G Y+C+a++++g+a + + L V mKIAA1628 438 QDA---GYYQCVAEnsAGTACA--AAPLAVV 463 FN3: domain 1 of 5, from 469 to 552: score 55.2, E = 8.4e-12 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... P++P++ +++t+ +s+ sv + We+P+ +++ i+g++ mKIAA1628 469 PSAPTR---VTATPLSSS------SVLVAWERPelhseqIIGFSlhy 506 .....................ytltgLkPgaepwteYefrVrAvngndaG ++ +++++++ + +++++++ +++L+P+ t Yef V+A++ G mKIAA1628 507 qkargvdnveyqfavnndtteLQVRDLEPN----TDYEFYVVAYSQ--LG 550 eg<-* + mKIAA1628 551 AS 552 FN3: domain 2 of 5, from 567 to 651: score 40.5, E = 2.2e-07 *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr. P++ + l++++ +++ +++ W p +++ +++ ++ Y+ mKIAA1628 567 PSAAPQ---LTLSSPNPS------DIRVAWLPLpsslsngqVLKYKi 604 ......................ytltgLkPgaepwteYefrVrAvngnda + + +++++++ ++++++++++ tl L+P+ + Y++r++A +g a mKIAA1628 605 eyglgkeedqvfstevpgnetqLTLNSLQPN----KVYRVRISAGTG--A 648 Geg<-* G+g mKIAA1628 649 GYG 651 FN3: domain 3 of 5, from 671 to 767: score 44.2, E = 1.7e-08 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.....ivgYr.... P +P l+v++ + s+++sW+pP+++ i gY+ ++ mKIAA1628 671 PFAPAE---LKVRAKME-------SLVVSWQPPphptqISGYKlywr 707 ...................................ytltgLkPgaepwte +++++++ ++++++++++++ +++++++ ++++++y lt L+Pg mKIAA1628 708 evgteeeadgdrppggrgdqawdvgpvrlkkkvkqYELTQLVPG----RL 753 YefrVrAvngndaGeg<-* Ye++++A+n+ + g mKIAA1628 754 YEVKLVAFNK--HEDG 767 FN3: domain 4 of 5, from 791 to 873: score 47.0, E = 2.5e-09 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... P pP + +++++ +st s+ l+W++P+ +iv+Y+++ mKIAA1628 791 PLPPAH---VHAESNSST------SIWLRWKKPdfttvkIVNYTvrf 828 ....................ytltgLkPgaepwteYefrVrAvngndaGe ++++ ++ + ++ ++++++ + gLkP t+Yef V+ + + + mKIAA1628 829 gpwglrnaslvtyytssgedILIGGLKPF----TKYEFAVQSH--GVDMD 872 g<-* g mKIAA1628 873 G 873 [output cut off at A = 10 top alignments] //