hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg00013/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1628 ( 1294 res) mbg00013 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- fn3 Fibronectin type III domain 275.3 8.1e-79 5 I-set Immunoglobulin I-set domain 111.7 1.4e-29 2 ig Immunoglobulin domain 73.4 4.7e-18 3 V-set Immunoglobulin V-set domain 19.3 0.0071 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ig 1/3 40 114 .. 1 65 [] 20.7 0.034 ig 2/3 148 205 .. 1 65 [] 37.9 2.2e-07 I-set 1/2 134 222 .. 1 97 [] 69.9 5.5e-17 V-set 1/2 132 222 .. 1 130 [] 17.9 0.0099 ig 3/3 249 447 .. 1 65 [] 17.7 0.28 I-set 2/2 235 463 .. 1 97 [] 42.3 1.1e-08 V-set 2/2 234 478 .. 1 130 [] 2.6 0.33 fn3 1/5 469 555 .. 1 84 [] 85.9 8e-22 fn3 2/5 567 654 .. 1 84 [] 60.5 3.5e-14 fn3 3/5 671 770 .. 1 84 [] 43.8 3.9e-09 fn3 4/5 791 876 .. 1 84 [] 39.7 6.5e-08 fn3 5/5 888 976 .. 1 84 [] 64.2 2.8e-15 Alignments of top-scoring domains: ig: domain 1 of 3, from 40 to 114: score 20.7, E = 0.034 *->GesvtLtCsvs.gfgppdvtvtWlrngk.lt.gvlvtssenngdsty ++ v L C+ + p+++vtW ++g ++ +++ + +n++ + + mKIAA1628 40 EQAVVLDCTLGaTAAGPPTRVTWSKDGDtVLeHENLHLLPNGSLWLS 86 qt..........sLtitnvtpeDggtYtCvv<-* + +++++++++ L+i +vt +g+Y+C + mKIAA1628 87 SPleqedsddeeALRIWKVT---EGSYSCLA 114 ig: domain 2 of 3, from 148 to 205: score 37.9, E = 2.2e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq ++++++ C+++ g p + +tW +++ +++++ + + +n++ mKIAA1628 148 NGTARFECHTK--GLPAPIITWEKDQVtVPeESRLITLPNGV----- 187 tsLtitnvtpeDggtYtCvv<-* L+i++v+ +D+g+Y+Cv+ mKIAA1628 188 --LQILDVQDSDAGSYRCVA 205 I-set: domain 1 of 2, from 134 to 222: score 69.9, E = 5.5e-17 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp F+ +p+++ V e +arfeC+ +G P P ++W Kd +++ mKIAA1628 134 EDFSLHPESQIVEENGTARFECHTKGLPAPIITWEKDQVTVPE---- 176 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaea.saeLtV ++r+ +g L I++vq +D+G Y+CvAtNsa + +++a+LtV mKIAA1628 177 ESRLITLPNG-----VLQILDVQDSDAGSYRCVATNSARQRFSqEASLTV 221 q<-* mKIAA1628 222 A 222 V-set: domain 1 of 2, from 132 to 222: score 17.9, E = 0.0099 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss ++ ++p+ s +v+e g++++ C+ + + + mKIAA1628 132 TLEDFSLHPE----------SQIVEENGTARFECHTK---GLP---- 161 gtgsvyWyrq.qppGekpeliiisyytyysysegngtvserfkgrvrfsg ++ ++W +++ + e +li +++ v mKIAA1628 162 AP-IITWEKDqVTVPEESRLIT-------------------LPNGV---- 187 npskgdfsLtIsnlqlsDsGtYyCa.........gggtrLtVl<-* L+I ++q sD G Y C+ +++ + + ++ LtV mKIAA1628 188 --------LQILDVQDSDAGSYRCVatnsarqrfSQEASLTVA 222 ig: domain 3 of 3, from 249 to 447: score 17.7, E = 0.28 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+sv + C + +++p + v+W r+g + ++ ++ +++ d q mKIAA1628 249 GQSVVMECVA--SADPTPFVSWVRQGDqSKkEL--GIQTSGCDAALQ 291 t................................................. +++ +++ +++ + ++++ ++ ++ +++ ++ ++ +++ mKIAA1628 292 Gcsgnlvvgegvegtvpaspssllllchqmeslsprmssfwagpiysspa 341 .................................................. ++ ++ ++ + +++++ + ++ + +++ ++++++++++++++++ + mKIAA1628 342 rslgtlesmsaeptsparvisplrllssecllpqpsrrrprrsrgrgpap 391 .....................................sLtitnvtpeDgg + + +++++++++ ++ +++++ ++ ++ + +++++sL+it++ +D+g mKIAA1628 392 rascagrpgshgprctgcttgsrcdpmgrvkvqggggSLVITQIGLQDAG 441 tYtCvv<-* +Y Cv+ mKIAA1628 442 YYQCVA 447 I-set: domain 2 of 2, from 235 to 463: score 42.3, E = 1.1e-08 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssv.. +++ p++ +V G+s+++eC ++ +P+P VsW + ++q ++ + mKIAA1628 235 VVIVAAPENTTVVSGQSVVMECVASADPTPFVSWVRQgDQSKKELgi 281 .................................................. ++++ + ++ +++ +++ +++ + ++++ ++ ++ +++ ++ mKIAA1628 282 qtsgcdaalqgcsgnlvvgegvegtvpaspssllllchqmeslsprmssf 331 .................................................. ++ +++ ++ ++ ++ + +++++ + ++ + +++ ++++++++ mKIAA1628 332 wagpiyssparslgtlesmsaeptsparvisplrllssecllpqpsrrrp 381 ...............................llpsdrfkvtydgGsgtyt ++++++++ ++ + +++++++++ ++ ++++ ++ +v++ g g + mKIAA1628 382 rrsrgrgpaprascagrpgshgprctgcttgSRCDPMGRVKVQG--GGGS 429 LtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtVq<-* L+I ++ D+G Y CvA+NsaG+a a a L V mKIAA1628 430 LVITQIGLQDAGYYQCVAENSAGTACAAAPLAVV 463 V-set: domain 2 of 2, from 234 to 478: score 2.6, E = 0.33 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss ++++ + p+ tv+ G+sv + C s d+ mKIAA1628 234 DVVIVA-APE----------NTTVVSGQSVVMECVAS---ADP---- 262 gtgsvyWyrqqpp..................................... ++ v+W+r q +++++ + ++++ + ++ +++ +++ +++ + + mKIAA1628 263 TP-FVSWVR-QGDqskkelgiqtsgcdaalqgcsgnlvvgegvegtvpas 310 .................................................. +++ ++ ++ +++ ++ ++ +++ ++ ++ ++ + +++++ + mKIAA1628 311 pssllllchqmeslsprmssfwagpiyssparslgtlesmsaeptsparv 360 .........................................Gekpeliii ++ + +++ ++++++++++++++++ ++ + ++++++++ mKIAA1628 361 isplrllssecllpqpsrrrprrsrgrgpaprascagrpgsHGPRCTGC- 409 syytyysysegngtvserfkgrvrfsgnpskgdfsLtIsnlqlsDsGtYy t+++r++ r+ ++++ sL I+++ l D G Y mKIAA1628 410 -------------TTGSRCDPMGRVKVQGG--GGSLVITQIGLQDAGYYQ 444 Ca.......................gggtrLtVl<-* C+ +++ ++ + +++ + tr+t + mKIAA1628 445 CVaensagtacaaaplavvvreglpSAPTRVTAT 478 fn3: domain 1 of 5, from 469 to 555: score 85.9, E = 8e-22 *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpkngge. PsaPt++t+t+++s+s+ + W++p+ ++ i g++++y q+++g ++ mKIAA1628 469 PSAPTRVTATPLSSSSVLVAWERPElHSEQIIGFSLHY-QKARGVDn 514 .wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* + ++ v ++tt+ ++++L+P+t+Ye++V+A+++ G ++ S mKIAA1628 515 vEYQFAVNNDTTELQVRDLEPNTDYEFYVVAYSQLGaSRTS 555 fn3: domain 2 of 5, from 567 to 654: score 60.5, E = 3.5e-14 *->PsaPtnltvtdvtstsltlsWsppt...gngpitgYevtyRqpkngg Psa +lt ++ +++ +++ W p +++ ng + +Y+++y ++ mKIAA1628 567 PSAAPQLTLSSPNPSDIRVAWLPLPsslSNGQVLKYKIEY-GLGKEE 612 e.wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* ++ ++ vpg++t+ tl+ L+P+ Y vr+ A +g+G G +S mKIAA1628 613 DqVFSTEVPGNETQLTLNSLQPNKVYRVRISAGTGAGyGVPS 654 fn3: domain 3 of 5, from 671 to 770: score 43.8, E = 3.9e-09 *->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge.. P aP l+v++ + sl++sW+pp++ i+gY++ +R +++++e+ mKIAA1628 671 PFAPAELKVRAKME-SLVVSWQPPPHPTQISGYKLYWR-EVGTEEea 715 ................wneltvpgtttsytltgLkPgteYevrVqAvngg ++++++++++++ + + ++++ +y+lt L+Pg+ Yev+++A n + mKIAA1628 716 dgdrppggrgdqawdvGPVRLKKKVK-QYELTQLVPGRLYEVKLVAFNKH 764 G.GpeS<-* +G mKIAA1628 765 EdGYAA 770 fn3: domain 4 of 5, from 791 to 876: score 39.7, E = 6.5e-08 *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyR.qpkngge P +P +++++++sts+ l+W++p+ +i +Y+v+ ++ ++ + mKIAA1628 791 PLPPAHVHAESNSSTSIWLRWKKPDfTTVKIVNYTVRFGpWGLRNAS 837 .wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* + +t +g + gLkP t+Ye+ Vq++ + +Gp+ mKIAA1628 838 lVTYYTSSGED--ILIGGLKPFTKYEFAVQSHGVDMdGPFG 876 fn3: domain 5 of 5, from 888 to 976: score 64.2, E = 2.8e-15 *->P.saPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpkngge P+ +P++l+ +++t+++++l+W ppt++ng+i Y + y ++ +++ mKIAA1628 888 PsTPPSDLRLSPLTPSTVRLHWCPPTePNGEIVEYLILY-SNNHTQP 933 ...wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* +++w+ lt g+ s++++gL+ +t+Y ++ A++++G+Gp+S mKIAA1628 934 ehqWTLLTTEGNIFSAEVHGLESDTRYFFKMGARTEVGpGPFS 976 //