hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg20692/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1627  ( 389 res)   mbg20692

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MT-A70   MT-A70                                          91.8    1.4e-23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MT-A70     1/1     225   383 ..     1   195 []    91.8  1.4e-23

Alignments of top-scoring domains:
MT-A70: domain 1 of 1, from 225 to 383: score 91.8, E = 1.4e-23
                   *->fdvIiaDPPWrnksrarkkrtkaelpystmnddeLlaLpipeladkG
                      fdvI+++PP+++++r    +t+++++++++++d++++L+i+e+a++ 
   mKIAA1627   225    FDVILLEPPLEEYYR----ETGITANEKCWTWDDIMKLEIDEIAAP- 266  

                   rslifLWcTnrelieaavkrecLkkWGfrlveeitWlKtntdgepifdkt
                   rs+ifLWc++ e++++  +r+cL+kWG+r++e+i+W+Ktn +++p+++kt
   mKIAA1627   267 RSFIFLWCGSGEGLDL--GRVCLRKWGYRRCEDICWIKTN-KNNPGKTKT 313  

                   lrsghwlrhpk.EhcLlgvkGnpkrsygkdfinanveLtndtdlIissvp
                   l+++++++++k  h   g+  + +            eL      + s   
   mKIAA1627   314 LDPKAVFQRTKyPHISTGLPPEHS------------EL---KVCVLSRQA 348  

                   erehSrKPdelf..eliehLcldkdedlrnkLELFARshnlrPgWltvGn
                   +   ++K  + + + +i+h     d  lr              + ++ G 
   mKIAA1627   349 VLKVIKKLKLAYyhQKIRHQV--GDCLLR--------------NVTSEGE 382  

                   e<-*
                       
   mKIAA1627   383 P    383  

//