hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg00117/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1626  ( 1241 res)   mpg00117

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGEF   Guanine nucleotide exchange factor for Rho/R   189.4    3.5e-52   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGEF     1/1     284   466 ..     1   211 []   189.4  3.5e-52

Alignments of top-scoring domains:
RhoGEF: domain 1 of 1, from 284 to 466: score 189.4, E = 3.5e-52
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      +l  ++q+E +YV++Lk +++ ++ pL++++     + ls ++ + +
   mKIAA1626   284    ILGSIVQSEGSYVESLKRILQDYRNPLMEMEP----KALSARKCQVV 326  

                   FgpNieeiyefHrrFLdeLeerveewllskdlKsernsviedsgerigdv
                   F+ ++ ei+ +H+ F ++L  rv+ew               ds+e+igd+
   mKIAA1626   327 FF-RVKEILHCHSMFQIALSSRVAEW---------------DSTEKIGDL 360  

                   FlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeiesk
                   F+++fs++  +++Ys Y++n+++a++++kk   + ++paF +flk+++  
   mKIAA1626   361 FVASFSKSMVLDVYSDYVNNFTNAMSIIKK--ACLTKPAFLEFLKRRQVC 408  

                   pncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLkk
                   +  r       tL  l++kPvQR+++ +LLL+++lk+tp++h+dr  L+ 
   mKIAA1626   409 STDR------VTLYGLMVKPVQRFPQFILLLQDMLKNTPRGHPDRLSLQL 452  

                   AleaikelasqvNe<-*
                   Al  +++la+++Ne   
   mKIAA1626   453 ALTELETLAEKLNE    466  

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