hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg00117/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1626  ( 1241 res)   mpg00117

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGEF   RhoGEF domain                                  127.6    2.3e-34   1
Reg_prop Two component regulator propeller               19.8      0.064   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGEF     1/1     284   466 ..     1   207 []   127.6  2.3e-34
Reg_prop   1/2     770   791 ..     1    23 []    10.0       51
Reg_prop   2/2    1021  1043 ..     1    23 []    10.1       50

Alignments of top-scoring domains:
RhoGEF: domain 1 of 1, from 284 to 466: score 127.6, E = 2.3e-34
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskpvltpddietiF
                      +l +++++E  Yv++L  ++++y+ pL e  + + + l++++ + +F
   mKIAA1626   284    ILGSIVQSEGSYVESLKRILQDYRNPLME--MEP-KALSARKCQVVF 327  

                   sNiediyefhreFLkssLearisssqfedlDekkiepsaqrlGdlFlkl.
                   + + +i+  h+ F + +L  r+ ++           +s++ +GdlF ++ 
   mKIAA1626   328 FRVKEILHCHSMFQI-ALSSRVAEW-----------DSTEKIGDLFVASf 365  

                   .kepflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgA
                   +k+  l+vY  Y++n+ +A+ +++k   + + p+F efl++++    t+ 
   mKIAA1626   366 sKSMVLDVYSDYVNNFTNAMSIIKK--ACLTKPAFLEFLKRRQVC-STD- 411  

                   kddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedqpdredLkkal
                        ++tL  L++kPvqR +  +LLL++ Lk tp   ++pdr +L++al
   mKIAA1626   412 -----RVTLYGLMVKPVQRFPQFILLLQDMLKNTPR--GHPDRLSLQLAL 454  

                   dllqdlaksiNe<-*
                     l++la+ +Ne   
   mKIAA1626   455 TELETLAEKLNE    466  

Reg_prop: domain 1 of 2, from 770 to 791: score 10.0, E = 51
                   *->slpgg.vtfalledsdGrlWigt.n<-*
                       l  + v+ + l+  +G+lW+g+++   
   mKIAA1626   770    LLGFSaVS-TSLP--QGYLWVGGgQ    791  

Reg_prop: domain 2 of 2, from 1021 to 1043: score 10.1, E = 50
                   *->slpgg.vtfalledsdGrlWigt.n<-*
                      + ++  vt+ l    +G lW+gt++   
   mKIAA1626  1021    GQKHLcVTSLLIC--QGLLWVGTdQ    1043 

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