hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08078/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1621  ( 810 res)   mbg08078

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CA       Cadherin repeats.                              394.2   7.5e-114   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CA         1/5     166   251 ..     1   121 []    75.8  5.4e-18
CA         2/5     275   356 ..     1   121 []    94.1  1.7e-23
CA         3/5     379   460 ..     1   121 []    84.5  1.3e-20
CA         4/5     484   570 ..     1   121 []    97.3  1.8e-24
CA         5/5     600   681 ..     1   121 []    57.9  1.3e-12

Alignments of top-scoring domains:
CA: domain 1 of 5, from 166 to 251: score 75.8, E = 5.4e-18
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                       +A D D      N         tY+++s+++    + +++ G ++p
   mKIAA1621   166    NNALDSDVA---INNI------QTYRLSSnshflVVTRNRSDGRKYP 203  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          ++++ k+LDREe          +e +Lt +A DgG pp     
   mKIAA1621   204 -------ELVLEKELDREEE---------PELRLTLTALDGGAPP----- 232  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             +s+ta+v ++V+D+NDNaP   
   mKIAA1621   233 ----------RSGTAQVLIEVVDINDNAP    251  

CA: domain 2 of 5, from 275 to 356: score 94.1, E = 1.7e-23
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.......lFsIdpetGtn
                      vsA D+Dsg   + gk      v Y +++++++ ++  +++p tG  
   mKIAA1621   275    VSANDLDSG---DYGK------VLYALSQpsediskTLEVNPVTG-- 310  

                   gpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgd
                            +i+++k+ D+E++         ++Y++ ++AtDgGg     
   mKIAA1621   311 ---------EIRLRKEVDFETI---------PSYEVDIKATDGGG----- 337  

                   ssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                               ls+ +t+  +V+DvNDNaP   
   mKIAA1621   338 ------------LSGKCTLLLKVVDVNDNAP    356  

CA: domain 3 of 5, from 379 to 460: score 84.5, E = 1.3e-20
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                      +s+ D+Ds    +Ngk         si+++ +F + +++ +      
   mKIAA1621   379    FSVKDPDSA---NNGK------MIASIEEdlPFLLKSSGKN------ 410  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                     +++++t+++LDREe+         ++Y++t++++D G+p+        
   mKIAA1621   411 --FYTLVTKRALDREER---------EKYNITITVSDLGTPR-------- 441  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          l+++ t+tv+V D NDNaP   
   mKIAA1621   442 -------LTTQHTITVQVSDTNDNAP    460  

CA: domain 4 of 5, from 484 to 570: score 97.3, E = 1.8e-24
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..........lFsIdpet
                      +sAtD D+g   +N++      ++Ys+l++++++   ++l sI++++
   mKIAA1621   484    ISATDSDAG---SNSH------ISYSLLPshdpqlaldsLISINADN 521  

                   GtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpp
                   G           +++++++LD+E+          + +++ v A D+G+p 
   mKIAA1621   522 G-----------QLFALRALDYEAL---------QAFEFHVGAIDQGSPA 551  

                   pgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                  lss+a v+v VlD NDNaP   
   mKIAA1621   552 ---------------LSSQALVRVVVLDDNDNAP    570  

CA: domain 5 of 5, from 600 to 681: score 57.9, E = 1.3e-12
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      v+A+D+Dsg   +N++      +++++l  ++++lFs+ +++G    
   mKIAA1621   600    VVAVDRDSG---QNAW------LSFQLLKatepgLFSVWAHNG---- 633  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          +++tt+ L   +          ++++L+  ++D+G pp     
   mKIAA1621   634 -------EVRTTRLLSERDV---------PKHRLVLLVKDNGDPP----- 662  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             +s+++t++v V+D    +    
   mKIAA1621   663 ----------RSASVTLHVLVVDGFSQPY    681  

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