hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj44318/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1620  ( 1418 res)   mfj44318

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PDZ      Domain present in PSD-95, Dlg, and ZO-1/2.      41.0    1.6e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/1      55   127 ..     1    80 []    41.0  1.6e-07

Alignments of top-scoring domains:
PDZ: domain 1 of 1, from 55 to 127: score 41.0, E = 1.6e-07
                   *->gglGfsivg....gifvssvvpGspAakaGrkslglLkvGDvIleVN
                      g  Gf+++g++++gifv ++ ++spAak+       L++GD++l+  
   mKIAA1620    55    GVSGFNVAGggkeGIFVRELREDSPAAKSLS-----LQEGDQLLSA- 95   

                   GetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                    ++  e++ +e+a++ll++a +     kv++ ++R     
   mKIAA1620    96 -RVFFENFKYEDALRLLQCAEP----YKVSFCLKRTV    127  

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