hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj44318/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1620  ( 1418 res)   mfj44318

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PDZ      PDZ domain (Also known as DHR or GLGF)          13.3      0.082   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/1      45   124 ..     1    82 []    13.3    0.082

Alignments of top-scoring domains:
PDZ: domain 1 of 1, from 45 to 124: score 13.3, E = 0.082
                   *->evtlekevkrgglGfsikggsdkgivvsevlpGsgaAeagGrLkeGD
                      e+++e e + g  Gf+++gg+++gi+v e+ ++s+aA+    L+eGD
   mKIAA1620    45    EIIVETEAQTGVSGFNVAGGGKEGIFVRELREDSPAAKSLS-LQEGD 90   

                   qIlsvNGqdvenlsheravlalkgsggsevtLtil<-*
                   q+ls   + +en+  e+a  +l+ +   +v+  ++   
   mKIAA1620    91 QLLSA-RVFFENFKYEDALRLLQCAEPYKVSFCLK    124  

//