hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp18039/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1617  ( 948 res)   mbp18039

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SAM      Sterile alpha motif.                            37.5    1.8e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SAM        1/1     875   941 ..     1    67 []    37.5  1.8e-06

Alignments of top-scoring domains:
SAM: domain 1 of 1, from 875 to 941: score 37.5, E = 1.8e-06
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                      + +ws+ +V ++++  +++  a +F+++ idg++llllt +   +e+
   mKIAA1617   875    PLeWSVTDVVRFIKLTDCAPLARIFQEQDIDGQALLLLT-LPTVQEC 920  

                   GitllGhRkkIlsaiqklkeq<-*
                   +  +lG+  k+++ i+  k     
   mKIAA1617   921 MELKLGPAIKLCHQIERVKVA    941  

//