hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp18039/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1617  ( 948 res)   mbp18039

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MBT      mbt repeat                                     344.1    1.5e-99   4
SAM_2    SAM domain (Sterile alpha motif)                24.2     0.0031   1
SAM_1    SAM domain (Sterile alpha motif)                21.1      0.003   1
SAM_PNT  Sterile alpha motif (SAM)/Pointed domain        12.8    0.00039   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MBT        1/4      87   162 ..     1    77 []   119.4  6.9e-32
MBT        2/4     201   276 ..     1    77 []    43.3  5.6e-09
MBT        3/4     313   390 ..     1    77 []    63.0  6.5e-15
MBT        4/4     420   492 ..     1    77 []   123.0  5.7e-33
SAM_1      1/1     876   939 ..     1    66 []    21.1    0.003
SAM_2      1/1     875   941 ..     1    72 []    24.2   0.0031
SAM_PNT    1/1     859   942 ..     1    91 []    12.8  0.00039

Alignments of top-scoring domains:
MBT: domain 1 of 4, from 87 to 162: score 119.4, E = 6.9e-32
                   *->MKLEAvDpqnpssicvATVvevlGyrYLrLrfDGwdsdysaDfWchv
                      MKLE+++++np +++vAT+++++G++ L+Lr+ G+ +d++aDfWc+v
   mKIAA1617    87    MKLEVANKNNPDTYWVATIITTCGQL-LLLRYCGYGEDRRADFWCDV 132  

                   dSpdIhPvGWCeknghpLqPPpgyrskkfs<-*
                     +d+hPvGWC++n+++L PP ++++k+++   
   mKIAA1617   133 IIADLHPVGWCTQNNKVLRPPDAIKDKYSD    162  

MBT: domain 2 of 4, from 201 to 276: score 43.3, E = 5.6e-09
                   *->MKLEAvDpqnpssicvATVvevlGyrYLrLrfDGwdsdysaDfWchv
                        +E +D qnp++++++ V+e++G+r LrLr+ G++   s+D W+ +
   mKIAA1617   201    --IELQDSQNPFQYWIVSVTENVGGR-LRLRYVGLEHTESYDRWLFY 244  

                   dSpdIhPvGWCeknghpLqPPpg..yrskkfs<-*
                    +  + P+GWC +n++ + PP++  y++  f+   
   mKIAA1617   245 LDYRLRPIGWCQENKYRMDPPSDlyYLKLPFE    276  

MBT: domain 3 of 4, from 313 to 390: score 63.0, E = 6.5e-15
                   *->MKLEAvDpqnpssicvATVvevlGyrYLrLrfDGwdsdysaD...fW
                      M+LE     +p+ i +A V++v+ ++++++ +D+++++   D+++  
   mKIAA1617   313    MRLETLHISDPFHIYPASVTKVFNSKFFQVAIDDLRPEA--DkptML 357  

                   chvdSpdIhPvGWCeknghpLqPPpgyrskkfs<-*
                   ch+dS  I Pv+WC kng +L PP+gy  ++f    
   mKIAA1617   358 CHADSLGILPVQWCLKNGVNLAPPKGYSGQDFN    390  

MBT: domain 4 of 4, from 420 to 492: score 123.0, E = 5.7e-33
                   *->MKLEAvDpqnpssicvATVvevlGyrYLrLrfDGwdsdysaDfWchv
                      MKLEAv+p np ++cvATVv v+G++ L+L+++G+++  + D ++++
   mKIAA1617   420    MKLEAVNPVNPGEVCVATVVSVKGRL-LWLHLEGLETPMP-DIIVDM 464  

                   dSpdIhPvGWCeknghpLqPPpgyrskkfs<-*
                   dS+dI+PvGWCe+n++pL++P  y+   +s   
   mKIAA1617   465 DSMDIFPVGWCEANSYPLTTP--YKASSKS    492  

SAM_1: domain 1 of 1, from 876 to 939: score 21.1, E = 0.003
                   *->dgwsvesVgeWLesigllgqYidnFlaagyidgdtllqlteeDLedl
                       +wsv +V ++++  +  +  +  F + + idg++ll+lt    ++ 
   mKIAA1617   876    LEWSVTDVVRFIKLTDC-APLARIF-QEQDIDGQALLLLTLPTVQEC 920  

                   GvtllGHrkkIlssIqgLk<-*
                   +  +lG++ k+++ I++ k   
   mKIAA1617   921 MELKLGPAIKLCHQIERVK    939  

SAM_2: domain 1 of 1, from 875 to 941: score 24.2, E = 0.0031
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                      +  ws+ +v  + +  ++ +  + +F +q i+g ++l l lt+ +  
   mKIAA1617   875    PLEWSVTDVVRFIKLTDC-APLARIFQEQDIDG-QAL-LLLTLPTV- 917  

                   klalGitsvghRkkilskiqelkqq<-*
                   + ++   ++g+  k+ ++i+++k+    
   mKIAA1617   918 Q-ECMELKLGPAIKLCHQIERVKVA    941  

SAM_PNT: domain 1 of 1, from 859 to 942: score 12.8, E = 0.00039
                   *->pssfkkeqkrlgipadlRtdPrlWtedhVleWLewavkenkfsLepi
                        s++ ++++l ++     +P +W+ ++V+++++   +    +L+  
   mKIAA1617   859    EDSSQSDEEKLILES----NPLEWSVTDVVRFIK-LTDC--APLAR- 897  

                   dfskFadmsGkeLCsls....kedFleraPlfvGdiLwehLqiLrkas<-
                   +f+++ d++G++L++l+ ++ +e+ +  ++  ++ +L  +++  + a+  
   mKIAA1617   898 IFQEQ-DIDGQALLLLTlptvQECMELKLG--PAIKLCHQIERVKVAF   942  

                   *
                    
   mKIAA1617     -   -    

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