hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mib/mib26058/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1616  ( 1718 res)   mib26058

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
Ion_trans Ion transport protein                          55.0    1.6e-12   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
Ion_trans   1/1     912  1123 ..     1   228 []    55.0  1.6e-12

Alignments of top-scoring domains:
Ion_trans: domain 1 of 1, from 912 to 1123: score 55.0, E = 1.6e-12
                   *->ileildyvftviFtlEmllkiialgfklhsr...iafkYlrspwNil
                        e++ + +++   +E    i++  +   +   ++ + +l+ +wN+ 
   mKIAA1616   912    TQEWIVISYIFTLGIEKMREILMSEP---GKllqKVKVWLQEYWNVT 955  

                   Dflvvlpslislilsllgggsegdlyvreskfsttpe.gsygllsvlrll
                   D++++l++ +++il+l+++                p +  ++++  ++++
   mKIAA1616   956 DLIAILLFSVGMILRLQDQ----------------PFrSDGRVIYCVNII 989  

                   Rll.RvLRllrlirrapglfRWelrtlGWelnslgrslksllnvllllll
                    +  R   ll ++ +++      l+++   + ++g+++++++++++++l+
   mKIAA1616   990 YWYiR---LLDIFGVNKY-----LGPY---VMMIGKMMIDMMYFVIIMLV 1028 

                   llfifaiigvqlFggelnkccnpingntnFdsfgnallwlFqtmTteGwg
                   +l+ f+++ + + + ++ +++          ++++  +w++        g
   mKIAA1616  1029 VLMSFGVARQAILFPNEEPSW------KLAKNIFYMPYWMI-----Y--G 1065 

                   dvmpdtl.......................agtvlgkiyfvsfiilggfl
                   +v +d ++++ +++++++++++ + ++ +++  ++  i +  + ++ ++l
   mKIAA1616  1066 EVFADQIdppcgqnetredgktiqlppcktGAWIVPAIMA-CYLLVANIL 1114 

                   llNLfiavi<-*
                   l+NL+iav    
   mKIAA1616  1115 LVNLLIAVF    1123 

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