hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm06332/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1614  ( 909 res)   mpm06332

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PDZ      PDZ domain (Also known as DHR or GLGF)          21.1      0.013   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/1     821   902 ..     1    82 []    21.1    0.013

Alignments of top-scoring domains:
PDZ: domain 1 of 1, from 821 to 902: score 21.1, E = 0.013
                   *->evtlekevkrgglGfsikggsdk...givvsevlpGsgaAeagGrLk
                      +++l+++   g +Gf ++ gs  +++g++v  +     a   +G L+
   mKIAA1614   821    QLQLQRP-PKGTFGFHVAHGSGRrdsGLYVQAMADLDTAKLYSGLLR 866  

                   eGDqIlsvNGqdvenlsheravlalkgsggsevtLtil<-*
                   +GD Il+v+G +v++l ++ ++++l  +   ++++ +l   
   mKIAA1614   867 VGDEILEVGGAKVAGLGLAHIKELLAHAE--SLSIRVL    902  

//