hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mia/mia02020/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1613 ( 797 res) mia02020 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- AA_permease Amino acid permease 61.8 1.4e-14 1 Cytochrom_C_asm Cytochrome C assembly protein -68.7 0.99 1 Spore_permease Spore germination protein -157.0 0.097 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Spore_permease 1/1 78 407 .. 1 330 [] -157.0 0.097 AA_permease 1/1 83 486 .. 1 528 [] 61.8 1.4e-14 Cytochrom_C_asm 1/1 345 682 .. 1 260 [] -68.7 0.99 Alignments of top-scoring domains: Spore_permease: domain 1 of 1, from 78 to 407: score -157.0, E = 0.097 *->kiStsQtfvLIvlfqlGsGiLtlprslAkqantpDGWIavLlgglii ++t +++L v++ +G G + + +Ak+ +p ++ +++ + mKIAA1613 78 VLTTVDLISLGVGSCVGTGMYVVSGLVAKEMAGPGVIVSFIIAAVAS 124 lllvllyykLlkkfpekt..lieyskkilGKwLGsllsflfalYFlylag +l +++y ++ + p++t++ + ys ++G + +++++ +l +l+ + mKIAA1613 125 ILSGVCYAEFGVRVPKTTgsAYTYSYVTVGEFVAFFIGWNLILEYLIGTA 174 rvlRdfsEvlqtfllpdtPtwii...................illlllvs +s +++ + + + +w++++ ++ ++ ++++++ ++ +l++ v+ mKIAA1613 175 AGASALSSMFDSLANHSISRWMVdtvgtlnglgkgeesypdlLALVIAVI 224 iYlisk.......GievlaRlgefcfiipilliillfilifslkqaeikN + +i+ + +++ G++++ ++ + +i ++ l+fi ++++ mKIAA1613 225 VTIIVAlgvknsvGFNNVLNVLNLAVWVFIMIAGLFFINGKYWAEGQF-- 272 LrPvlgnGispvLkgaLlkttslpFtGfEilLmlypfmkdkKkvkkaall l++G+s vL g + t ++F+Gf i+ + k+++ + +a+ mKIAA1613 273 ----LPHGWSGVLQG--AATCFYAFIGFDIIATTGEEAKNPNTSIPYAIT 316 gvgisgllYtlttiivIgvLgvd.qtktltWPtLsLlkvievpGefIERl + ++++ l + + + I++L v+ ++ + P+ +++ v+ + mKIAA1613 317 A-SLVICLTAYVSVSMILTLMVPyYAIDTESPLMEMF----VA-HGF--- 357 eyflisvWilviFftiaiylyaaslglseiFkkknkssayllviligiif y + +v+ ++ + +++l + ++F++ ++ ++ ++ g + mKIAA1613 358 -YAAKFVVAIGSVAGLTVSLLG------SLFPM--PR---VIYAMAGDGL 395 iissipknsnfv<-* ++ ++ s+++ mKIAA1613 396 LFRFLAHVSSYT 407 AA_permease: domain 1 of 1, from 83 to 486: score 61.8, E = 1.4e-14 *->hvqmialGgviGtGLfvgsgsvl.aqaGpaglsllgyllagvviflv ++++ ++G+ +GtG++v sg v + +aGp g+ ++++++a v ++l mKIAA1613 83 DLISLGVGSCVGTGMYVVSGLVAkEMAGP-GV-IVSFIIAAVASILS 127 mlslgEmstngpvvsGsfyayasrflgpslGfatGwnylltvYwlswvav +++++E+++ +p +Gs+y+y+ +g+ ++f++Gwn l ++++ mKIAA1613 128 GVCYAEFGVRVPKTTGSAYTYSYVTVGEFVAFFIGWN-----LILEYLIG 172 laleltaagiliqfwetfpdipylwvtgslvdSgpndiRvI......... a+++ a+++ + ++ ++ i+ +w+ d +++ ++ +++ mKIAA1613 173 TAAGASALSSMFDSL-ANHSIS-RWMV----D-------TVgtlnglgkg 209 ........gavflvllliinlfgvKvygefEfwfaliKviaiigfiIvga +++ ++ ++v+ v+++ii + gvK + f +++++ + + +I g+ mKIAA1613 210 eesypdllALVIAVIVTIIVALGVKNSVGFNNVLNVLNLAVWVFIMIAGL 259 vviilifgggpnngllfhaigfrylgdngatfkdnfpggfapspgtgsFl ++i ng ++ g ++p+g + mKIAA1613 260 FFI---------NG---------KYWAEGQ----FLPHG---------WS 278 gflsvfviaaFaFtGielvgiaAgEsknPrKaiPkAilqviwritifYil g+l ++++++ aF G+ +++++++E+knP +iP Ai +++ + Y+ mKIAA1613 279 GVLQGAATCFYAFIGFDIIATTGEEAKNPNTSIPYAITASLVICLTAYVS 328 sllaigllvpwndpgllaasasaFFdCkpdcsaSpfviafkelgikglah ++ +++l vp+ +++ + p++ f+ +g ++ + mKIAA1613 329 VSMILTLMVPYYAIDTES----------------PLMEMFVAHGFYAAKF 362 linaviLtaaLSaansslyagsRmlyslAqdglaPikkflkkv.dksgvP ++ ++ + ++ ++++sl+ ++R++y++A dgl+ +fl+ v++ P mKIAA1613 363 VVAIGSVAGLTVSLLGSLFPMPRVIYAMAGDGLLF--RFLAHVsSYTETP 410 lrAillstlisllavavlGsLiiliaslnpaapivfnfllaisgligliv ++A ++s ++++l+ l++sl mKIAA1613 411 VVACIVSGFLAALLS--------LLVSLRDL------------------- 433 wllislshlrfRkafkyqgrsidelpfkaplgplgpilvlaaliiilliq +++i +l+a +++ + mKIAA1613 434 -------------------------------IEMMSIGTLLAYTLVSVCV 452 ayyaflpvpkgpktwgaadfaalyltvplfliiligyklhvknkkpkvlk ++ ++p + + +++ fl + ++k +++ + mKIAA1613 453 LLLRYQP-------------ESDIDGFVKFL---SEEHTKKKEGILADCE 486 <-* mKIAA1613 - - Cytochrom_C_asm: domain 1 of 1, from 345 to 682: score -68.7, E = 0.99 *->lsnlyesllllawglsllpllledktrglnlsflgavslpasl.... s+l e+ ++a+g++ + +++++ ++++ l++sl ++ mKIAA1613 345 ESPLMEM--FVAHGFYAAKFVVAI---------GSVAGLTVSLlgsl 380 ..................................lilgfalfsfriplwf + ++ +++ + + ++ ++++ +++gf+ + mKIAA1613 381 fpmprviyamagdgllfrflahvssytetpvvacIVSGFLAA-------- 422 LllLlySnpflrlLpaemqqgadlvpalqspwLmlHVplallSYatliig l s l ++S +tl+ mKIAA1613 423 ---------------------------LLSLLVSLRDLIEMMSIGTLLAY 445 allsialLii........................................ +l+s+ L+++ +++++ ++ + ++++++++++ + ++++ ++ ++ mKIAA1613 446 TLVSVCVLLLryqpesdidgfvkflseehtkkkegiladceketcspvse 495 .................................................. +++ +++ +++ + ++ ++ ++++ ++++++ + ++++ ++ + +++ mKIAA1613 496 geefsspatntcgaknlpslgdnemligksdksaynvnhpnygtvdmttg 545 ..l.kneyln.ks.sd.ql.lksksvrlqdraLkkkkkknsnnlpllktl + +++e+ + ++ + +++ ++++++ + ++ ++ + mKIAA1613 546 ieAdESENIYlIKlKKlIGpRY--------YTMRIRLGLPGKMDRPTAA- 586 drlsyriiliGfpfLTig.......iitGsvWAYyneaWGtyWsWDPKet ++ +i++++L+i + ii+Gs + G+ W+ + + mKIAA1613 587 ---TGHTVTICVLLLFILmfifcsfIIFGSEYI-----SGQSWW--AILL 626 wsLilWlvyaayLhsriatekrgwrgkkaailail....GFvllliayFg +L+ +l+ + ++ +++ +k + + +l+ ++F l+ +y+ mKIAA1613 627 VVLMMLLISVLVFVIL---QQPENPKKLPYMAPCLpfvpAFAMLVNIYLM 673 Vnllgeglh<-* +l ++++ mKIAA1613 674 LKLSTITWI 682 //