hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mph/mph00982/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1611 ( 558 res) mph00982 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ZnF_C2H2 zinc finger 361.3 6.2e-104 16 KRAB krueppel associated box 112.6 4.4e-29 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- KRAB 1/1 13 73 .. 1 62 [] 112.6 4.4e-29 ZnF_C2H2 1/16 112 134 .. 1 23 [] 30.0 0.00032 ZnF_C2H2 2/16 140 162 .. 1 23 [] 25.3 0.0087 ZnF_C2H2 3/16 168 190 .. 1 23 [] 29.7 0.00039 ZnF_C2H2 4/16 196 218 .. 1 23 [] 31.6 0.00011 ZnF_C2H2 5/16 224 246 .. 1 23 [] 29.4 0.00048 ZnF_C2H2 6/16 252 274 .. 1 23 [] 27.1 0.0024 ZnF_C2H2 7/16 280 302 .. 1 23 [] 27.0 0.0026 ZnF_C2H2 8/16 308 330 .. 1 23 [] 27.8 0.0014 ZnF_C2H2 9/16 336 358 .. 1 23 [] 27.3 0.002 ZnF_C2H2 10/16 364 386 .. 1 23 [] 29.7 0.0004 ZnF_C2H2 11/16 392 414 .. 1 23 [] 29.9 0.00034 ZnF_C2H2 12/16 420 442 .. 1 23 [] 28.7 0.00079 ZnF_C2H2 13/16 448 470 .. 1 23 [] 27.1 0.0024 ZnF_C2H2 14/16 476 498 .. 1 23 [] 29.3 0.00052 ZnF_C2H2 15/16 504 526 .. 1 23 [] 27.2 0.0023 ZnF_C2H2 16/16 532 554 .. 1 23 [] 30.4 0.00025 Alignments of top-scoring domains: KRAB: domain 1 of 1, from 13 to 73: score 112.6, E = 4.4e-29 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk ++F DVA++FsqEEWe+LD aQr+L RdVMlENYsnL SLG +++ mKIAA1611 13 LSFSDVAIEFSQEEWECLDHAQRALHRDVMLENYSNLLSLG-VTLPN 58 pdliskLEqgeEpwi<-* +skLEq + pw+ mKIAA1611 59 LNAMSKLEQYKGPWT 73 ZnF_C2H2: domain 1 of 16, from 112 to 134: score 30.0, E = 0.00032 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+fs+ ++Lk H r+H mKIAA1611 112 YKCNE-CGKVFSQNsHLKSHRRIH 134 ZnF_C2H2: domain 2 of 16, from 140 to 162: score 25.3, E = 0.0087 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgk fs +++L++H+ +H mKIAA1611 140 FKCNH-CGKAFSVRsNLTHHQVIH 162 ZnF_C2H2: domain 3 of 16, from 168 to 190: score 29.7, E = 0.00039 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+fs+ ++L+ H r+H mKIAA1611 168 YKCNE-CGKVFSQTsSLTIHRRTH 190 ZnF_C2H2: domain 4 of 16, from 196 to 218: score 31.6, E = 0.00011 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+fss+++L+ H+ +H mKIAA1611 196 YRCNE-CGKVFSSHsNLNTHQAIH 218 ZnF_C2H2: domain 5 of 16, from 224 to 246: score 29.4, E = 0.00048 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+f++ ++L +H r+H mKIAA1611 224 YKCSE-CGKVFTQNsHLANHWRIH 246 ZnF_C2H2: domain 6 of 16, from 252 to 274: score 27.1, E = 0.0024 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs +++L+ H+ +H mKIAA1611 252 YKCNE-CGKAFSVYsSLTTHQAIH 274 ZnF_C2H2: domain 7 of 16, from 280 to 302: score 27.0, E = 0.0026 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+f++ ++L H vH mKIAA1611 280 YKCNE-CGKVFTQNsHLASHRGVH 302 ZnF_C2H2: domain 8 of 16, from 308 to 330: score 27.8, E = 0.0014 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs+ ++L rH rvH mKIAA1611 308 YKCEE-CGKLFSQTsNLARHWRVH 330 ZnF_C2H2: domain 9 of 16, from 336 to 358: score 27.3, E = 0.002 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs +++L+ H+ +H mKIAA1611 336 YKCSE-CGKAFSVRsSLIAHQVIH 358 [output cut off at A = 10 top alignments] //