hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mph/mph00982/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1611 ( 558 res) mph00982 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- zf-C2H2 Zinc finger, C2H2 type 478.5 5.5e-140 16 KRAB KRAB box 94.3 2.4e-24 1 FYVE FYVE zinc finger -17.9 0.59 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- KRAB 1/1 13 53 .. 1 41 [] 94.3 2.4e-24 zf-C2H2 1/16 112 134 .. 1 24 [] 38.1 2e-07 zf-C2H2 2/16 140 162 .. 1 24 [] 33.8 4e-06 zf-C2H2 3/16 168 190 .. 1 24 [] 37.6 2.9e-07 zf-C2H2 4/16 196 218 .. 1 24 [] 37.3 3.5e-07 zf-C2H2 5/16 224 246 .. 1 24 [] 38.8 1.2e-07 zf-C2H2 6/16 252 274 .. 1 24 [] 33.3 5.6e-06 zf-C2H2 7/16 280 302 .. 1 24 [] 33.3 5.7e-06 zf-C2H2 8/16 308 330 .. 1 24 [] 37.4 3.3e-07 zf-C2H2 9/16 336 358 .. 1 24 [] 34.2 2.9e-06 zf-C2H2 10/16 364 386 .. 1 24 [] 37.1 4.1e-07 FYVE 1/1 325 403 .. 1 77 [] -17.9 0.59 zf-C2H2 11/16 392 414 .. 1 24 [] 35.2 1.5e-06 zf-C2H2 12/16 420 442 .. 1 24 [] 36.6 5.5e-07 zf-C2H2 13/16 448 470 .. 1 24 [] 33.3 5.6e-06 zf-C2H2 14/16 476 498 .. 1 24 [] 37.8 2.5e-07 zf-C2H2 15/16 504 526 .. 1 24 [] 34.8 2e-06 zf-C2H2 16/16 532 554 .. 1 24 [] 40.1 5.1e-08 Alignments of top-scoring domains: KRAB: domain 1 of 1, from 13 to 53: score 94.3, E = 2.4e-24 *->VtFeDVAVdFtqEEWglLdpaQrnLYrdVMlENyrnLvSlg<-* ++F DVA++F+qEEW++Ld aQr+L+rdVMlENy+nL+Slg mKIAA1611 13 LSFSDVAIEFSQEEWECLDHAQRALHRDVMLENYSNLLSLG 53 zf-C2H2: domain 1 of 16, from 112 to 134: score 38.1, E = 2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs++s+Lk+H+r+H mKIAA1611 112 YKCN-ECGKVFSQNSHLKSHRRIH 134 zf-C2H2: domain 2 of 16, from 140 to 162: score 33.8, E = 4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+Fs +snL++H+ +H mKIAA1611 140 FKCN-HCGKAFSVRSNLTHHQVIH 162 zf-C2H2: domain 3 of 16, from 168 to 190: score 37.6, E = 2.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ s+L+ H+rtH mKIAA1611 168 YKCN-ECGKVFSQTSSLTIHRRTH 190 zf-C2H2: domain 4 of 16, from 196 to 218: score 37.3, E = 3.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++snL++H+ +H mKIAA1611 196 YRCN-ECGKVFSSHSNLNTHQAIH 218 zf-C2H2: domain 5 of 16, from 224 to 246: score 38.8, E = 1.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s+L +H+r+H mKIAA1611 224 YKCS-ECGKVFTQNSHLANHWRIH 246 zf-C2H2: domain 6 of 16, from 252 to 274: score 33.3, E = 5.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs s+L++H+ +H mKIAA1611 252 YKCN-ECGKAFSVYSSLTTHQAIH 274 zf-C2H2: domain 7 of 16, from 280 to 302: score 33.3, E = 5.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s+L +H+ +H mKIAA1611 280 YKCN-ECGKVFTQNSHLASHRGVH 302 zf-C2H2: domain 8 of 16, from 308 to 330: score 37.4, E = 3.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk Fs+ snL rH+r+H mKIAA1611 308 YKCE-ECGKLFSQTSNLARHWRVH 330 zf-C2H2: domain 9 of 16, from 336 to 358: score 34.2, E = 2.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs +s+L +H+ +H mKIAA1611 336 YKCS-ECGKAFSVRSSLIAHQVIH 358 zf-C2H2: domain 10 of 16, from 364 to 386: score 37.1, E = 4.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ s+L H+r+H mKIAA1611 364 YKCT-ECGKVFSQTSSLSIHQRIH 386 FYVE: domain 1 of 1, from 325 to 403: score -17.9, E = 0.59 *->phWv..pDeevsnCmrCgkpFtk...........ltkRrHHCRaCGr +hW + e+ +C++Cgk F+ +++ ++ + + C CG+ mKIAA1611 325 RHWRvhTGEKPYKCSECGKAFSVrssliahqvihTGEKPYKCTECGK 371 ifCgsCssktvllpylgiaallkndviekpvRVCdsCydrlnk<-* +f s+ ++l+ +++i+ ekp+R C++C n mKIAA1611 372 VF----SQTSSLSIHQRIHTG------EKPYR-CNECGKAFNS 403 zf-C2H2: domain 11 of 16, from 392 to 414: score 35.2, E = 1.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+++snL++H+ +H mKIAA1611 392 YRCN-ECGKAFNSHSNLNTHQVIH 414 zf-C2H2: domain 12 of 16, from 420 to 442: score 36.6, E = 5.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgk+F+++s+L +H+rtH mKIAA1611 420 YKCM-QCGKVFTQNSHLANHQRTH 442 zf-C2H2: domain 13 of 16, from 448 to 470: score 33.3, E = 5.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs s+L++H+ +H mKIAA1611 448 YKCN-ECGKAFSVYSSLTTHQAIH 470 zf-C2H2: domain 14 of 16, from 476 to 498: score 37.8, E = 2.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s+L +H+rtH mKIAA1611 476 YKCN-ECGKVFTQNSHLASHRRTH 498 zf-C2H2: domain 15 of 16, from 504 to 526: score 34.8, E = 2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+k+Fs +s+L++H+ +H mKIAA1611 504 YQCN-KCDKAFSVRSSLTTHQAIH 526 zf-C2H2: domain 16 of 16, from 532 to 554: score 40.1, E = 5.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fsr+snL++H+r H mKIAA1611 532 YTCS-ECGKVFSRSSNLTSHQRLH 554 //