hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm01218/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1610  ( 554 res)   mpm01218

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
ELM2            ELM2 domain                              57.4      3e-13   1
Myb_DNA-binding Myb-like DNA-binding domain              44.2      3e-09   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
ELM2              1/1     222   289 ..     1    81 []    57.4    3e-13
Myb_DNA-binding   1/1     327   373 ..     1    65 []    44.2    3e-09

Alignments of top-scoring domains:
ELM2: domain 1 of 1, from 222 to 289: score 57.4, E = 3e-13
                   *->geIrVGskyQAdvPefCRlpeterdeseeredLTkkedeekldelvW
                      +eI+VGs++QA++P +  ++ + + e+ +++d          d+l+W
   mKIAA1610   222    KEIMVGSMFQAEIPVG--VCRYKENEKVYEND----------DQLLW 256  

                   sPeDsqnqlddekidqylrlarsl...kkslgtfara<-*
                   +Pe     l +ek+  +l++a ++++++k++++++     
   mKIAA1610   257 DPE----CLPEEKVVVFLKDASRRtgdEKGVEAIPEG    289  

Myb_DNA-binding: domain 1 of 1, from 327 to 373: score 44.2, E = 3e-09
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                       ++Wt+eE+  ++++++ +Gk+           +++I +        
   mKIAA1610   327    LSVWTEEECRNFEQGLKAYGKD-----------FHLIQANK------ 356  

                   nvlgrtaeqcklryykyk<-*
                    v +r++ +c+ +yy++k   
   mKIAA1610   357 -VRTRSVGECVAFYYMWK    373  

//