hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mib/mib38091/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1609  ( 274 res)   mib38091

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TLD      TLD                                            282.0    7.6e-81   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TLD        1/1      55   199 ..     1   165 []   282.0  7.6e-81

Alignments of top-scoring domains:
TLD: domain 1 of 1, from 55 to 199: score 282.0, E = 7.6e-81
                   *->LLYssskHGtSlntllrkvekeyddkgPtllvikdtDgqvFGayass
                      LL+s++ HG+S+++l+++++    ++gP+llv++d+Dg+vFG++as+
   mKIAA1609    55    LLFSTQLHGQSFSQLCSHIT----SQGPSLLVLEDRDGYVFGGFASC 97   

                   swrespvKRnFyGtgDsesCFLFtlnkelPpkkfavyrwTGknDddksnn
                   sw+++p   +F+G++  ++ FLF+++   P   +a++ +TG+n     n+
   mKIAA1609    98 SWEVKP---QFQGDN--RC-FLFSIA---P--RMATHLHTGYN-----NH 131  

                   fiylntdqqtyPngLgiGGgsgrfgLwlDedlknGessp.esceTFnnpp
                   f+yln+ qqt+PngLg+GG++++fgLw+ +d+++G+s ++++c+T+n+ p
   mKIAA1609   132 FMYLNYGQQTMPNGLGMGGQHHYFGLWVAADFGKGHSKAkPACTTYNS-P 180  

                   LlskdedFkIqdiEvWgvg<-*
                   +ls++edF ++++EvWg+g   
   mKIAA1609   181 QLSAQEDFLFDKMEVWGLG    199  

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