hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mkg/mkg10115/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1608  ( 845 res)   mkg10115

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DENN     DENN (AEX-3) domain                            269.2    5.5e-77   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DENN       1/1      71   246 ..     1   231 []   269.2  5.5e-77

Alignments of top-scoring domains:
DENN: domain 1 of 1, from 71 to 246: score 269.2, E = 5.5e-77
                   *->rvpksiCliSrlpffeaFrkvLlelkrvldssqasslppssglksgk
                            ++ S+lp+fe+F+k+L++l ++++++q+s+           
   mKIAA1608    71    ------TVTSYLPWFEVFYKLLNILADYTTKRQESQ----------- 100  

                   srdtvwrvltgvlevLhdirElEslirnLlyeVplPapGktirvkvvvls
                                        +++l+++L++ +p+P+pG +++++v+ ++
   mKIAA1608   101 ---------------------WNELLETLHR-LPIPDPGVSVHLSVHSYF 128  

                   sgvkHyrplelilfplpdplplpledfdlaelFeaLGvenvlqLfaaaLl
                   ++            p+ ++lp+++e+++l+e+F+a++v+n+l+L+a++L+
   mKIAA1608   129 TV------------PDSRELPSIPENRNLTEYFVAVDVNNMLHLYASMLY 166  

                   ErkiLflSsklsrLsscchAlvaLLYPleWqhpyIPvLPasLlsAEdvLc
                   Er+iL+++skls+L++c+h ++a+LYP++Wqh+yIPvLP++Ll   d++c
   mKIAA1608   167 ERRILIICSKLSTLTACIHGSAAMLYPMYWQHVYIPVLPPHLL---DYCC 213  

                   APtPFlIGVhssffelvkdlpleidvvvVDLDtn<-*
                   AP+P+lIG+h s++e+v++++l+ dvv++++Dtn   
   mKIAA1608   214 APMPYLIGIHLSLMEKVRNMALD-DVVILNVDTN    246  

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