hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msk/msk09334/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1607  ( 355 res)   msk09334

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                    87.3    1.8e-21   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/5      92   132 ..     1    46 []     7.3       34
WD40       2/5     142   181 ..     1    46 []    38.5  8.9e-07
WD40       3/5     184   222 ..     1    46 []    15.5      1.8
WD40       4/5     224   271 ..     1    46 []    22.6    0.054
WD40       5/5     317   352 ..     1    46 []    12.2      5.8

Alignments of top-scoring domains:
WD40: domain 1 of 5, from 92 to 132: score 7.3, E = 34
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++k l+t++   +  + + +a++p+       +++++++    +++W
   mKIAA1607    92    SdKILMTFE-NLAAWGPCLCAVCPSP------TMIVTSGaSAVVCIW 131  

                   d<-*
                   +   
   mKIAA1607   132 E    132  

WD40: domain 2 of 5, from 142 to 181: score 38.5, E = 8.9e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        kl + l gHt+  +Vt+++ s +       +ll+sgs+D+t+ lW
   mKIAA1607   142    GlKLRQALYGHTQ--AVTCLTASVTF------SLLVSGSqDRTCILW 180  

                   d<-*
                   d   
   mKIAA1607   181 D    181  

WD40: domain 3 of 5, from 184 to 222: score 15.5, E = 1.8
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        + ++ l+ H+   +++++a+s+ +        ++s+ + + + lW
   mKIAA1607   184    HlSRVACLPVHRE--GISAIAISDVS------GTIVSCAgAH-LSLW 221  

                   d<-*
                   +   
   mKIAA1607   222 N    222  

WD40: domain 4 of 5, from 224 to 271: score 22.6, E = 0.054
                   *->t.kllrtlk...gHtgespVtsvafspdggssdspnllasgs.Dgti
                      ++++l+++++  g +g   +t++++       d ++++++gs+Dg +
   mKIAA1607   224    NgQPLASITtawGPEG--TITCCCIVEGPAW-DASHVIITGSkDGMV 267  

                   rlWd<-*
                   r+W+   
   mKIAA1607   268 RIWK    271  

WD40: domain 5 of 5, from 317 to 352: score 12.2, E = 5.8
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++k+ +  +      +Vt++a+  +       + l++g++ g i +W
   mKIAA1607   317    SgKPSKASP------AVTALAITRNQ------SKLLVGDeKGRIFCW 351  

                   d<-*
                   +   
   mKIAA1607   352 S    352  

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