hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msk/msk09334/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1607  ( 355 res)   msk09334

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                        71.5    1.8e-17   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/4      94   132 ..     1    38 []     4.5       57
WD40       2/4     144   181 ..     1    38 []    36.4  6.3e-07
WD40       3/4     186   222 ..     1    38 []    12.2      6.4
WD40       4/4     229   271 ..     1    38 []    29.9  6.1e-05

Alignments of top-scoring domains:
WD40: domain 1 of 4, from 94 to 132: score 4.5, E = 57
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      + l +++   ++  c++ + +s+++++++++   ++iW+   
   mKIAA1607    94    KILMTFeNLAAWGPCLCAVCPSPTMIVTSGASAVVCIWE    132  

WD40: domain 2 of 4, from 144 to 181: score 36.4, E = 6.3e-07
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++ + l+gHt +Vtc+  s    +ll+sgS D+t+ +Wd   
   mKIAA1607   144    KLRQALyGHTQAVTCLTASVT-FSLLVSGSQDRTCILWD    181  

WD40: domain 3 of 4, from 186 to 222: score 12.2, E = 6.4
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        +a l+ H  +++++a+s   + +++s+    ++ +W+   
   mKIAA1607   186    SRVACLpVHREGISAIAISDV-SGTIVSCAG-AHLSLWN    222  

WD40: domain 4 of 4, from 229 to 271: score 29.9, E = 6.1e-05
                   *->eclavl.gHtspVtcvafspd....sgpllasgSrDgtikiWd<-*
                        +++  g ++++tc++++  ++ + ++++++gS Dg ++iW+   
   mKIAA1607   229    ASITTAwGPEGTITCCCIVEGpawdASHVIITGSKDGMVRIWK    271  

//