hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01518/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1606  ( 2063 res)   mbg01518

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PAH           Paired amphipathic helix repeat           103.7    3.6e-27   2
Nucleoplasmin Nucleoplasmin                             -91.4       0.62   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Nucleoplasmin   1/1      59   213 ..     1   281 []   -91.4     0.62
PAH             1/2    1473  1521 ..     1    47 []    52.3    1e-11
PAH             2/2    1555  1602 ..     1    47 []    52.0  1.3e-11

Alignments of top-scoring domains:
Nucleoplasmin: domain 1 of 1, from 59 to 213: score -91.4, E = 0.62
                   *->maeeyffGceLskdKKiFKWdaesksftfkVdeEedaisHkLaLkqi
                             G  L            +  +++k d+  d+          
   mKIAA1606    59    -------GKGLE---------QGTMVYDPKLDDMLDR---------- 79   

                   sLGagAKDdEfNVVEveTqnnDDyegkevkvPiAsLKlSeqpmvnldvfe
                   +L +gAK   +N   v+ +n   +e  +   ++A  K+ + ++  +  f 
   mKIAA1606    80 TLEDGAKQ--HNLTAVNVRN-ILHEVITNEHVVAMMKAAISETEDMPLF- 125  

                   lepPVTF.rLk....sGSGPVYisGqHlvdleEdeEaeKDFEGAEAYEve
                    ep+ T ++Lk+  ++G   V i   ++      +E  K          e
   mKIAA1606   126 -EPKMTRsKLKevveKG---VVIPTWNISPIKKASEI-KQPPQFVDIHLE 170  

                   eEDleeedeseedeeeeetaKkgskKRiVKKiAAVKGRmKGKgdeleeeE
                   e D +                                          +eE
   mKIAA1606   171 EDDSS------------------------------------------DEE 178  

                   edDEeEEeeddEiqTAKGKKRPAPSAKGPAKKLAKVDKDavkkrkvtkks
                   ++  eEEe++                                        
   mKIAA1606   179 YSPDEEEEDET--------------------------------------- 189  

                   deddedDDdEDEeeeEdapikDEEeekpAkkgekeksnk<-*
                     + e ++++D e+     +        A ++++ k      
   mKIAA1606   190 --AEESLLESDVES-----T--------ASSPRGVKRSR    213  

PAH: domain 1 of 2, from 1473 to 1521: score 52.3, E = 1e-11
                   *->pekYksFlkiLnmykkkridkd..eliarvseLlkdhpdLlegFsaF
                      p kY++Fl+i++++ ++ ++++  +l+++++ Ll+d+p+Ll++F aF
   mKIAA1606  1473    PGKYEDFLQIIYEFESSTQMHSavDLFKSLQTLLQDWPQLLKDFAAF 1519 

                   lp<-*
                   l+   
   mKIAA1606  1520 LL    1521 

PAH: domain 2 of 2, from 1555 to 1602: score 52.0, E = 1.3e-11
                   *->pekYksFlkiLnmykkkridkd.eliarvseLlkdhpdLlegFsaFl
                      p+++++++k+L+ + +++ +   el++++++Ll++h++L+++Fs+F+
   mKIAA1606  1555    PSHHQKIIKVLQGCADCLPQDIaELKTQMWQLLRGHDHLQDEFSIFF 1601 

                   p<-*
                   +   
   mKIAA1606  1602 D    1602 

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