hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtj/mtj01230/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1605  ( 940 res)   mtj01230

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DUF608   Protein of unknown function, DUF608            556.6   1.7e-163   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF608     1/1     534   901 ..     1   443 []   556.6 1.7e-163

Alignments of top-scoring domains:
DUF608: domain 1 of 1, from 534 to 901: score 556.6, E = 1.7e-163
                   *->GrFaylEgpevyrmlnTiDVhfeYgLSfalLmlFPkLElSiqrdFar
                      GrF+ylEg e yrm+nT+DVhf Y+ Sfal+ml+PkLElS q d a 
   mKIAA1605   534    GRFGYLEGQE-YRMYNTYDVHF-YA-SFALVMLWPKLELSLQYDMAL 577  

                   avlkeDpkevvllsdgelvtLmkYkeerKvdgavPHDLGkhddtikkiik
                   a lkeD +++  l +g +++       +K ++ +PHD+G +d        
   mKIAA1605   578 ATLKEDLTRRRYLMSGVVAP-------VKRRNVIPHDIGDPD-------- 612  

                   etvedPweetNaYilhsLtvdtyrWKDLNPkFVLlvYRDfkLlaTgDreG
                      + Pw ++NaY +h    dt  WKDLN+kFVL++YRD+    TgD   
   mKIAA1605   613 ---DEPWLRVNAYLIH----DTADWKDLNLKFVLQIYRDYY--LTGDQG- 652  

                   qFLeevypsvvkaiDdylertfDkDNLPYLtLPsGieWmRhvnnmLkvsD
                    FLe+ +p++ +++ ++++  fDkD                         
   mKIAA1605   653 -FLEDMWPVCLAVM-ESEMK-FDKDQ------------------------ 675  

                   ahkDglieneGfpDQTYDaWsmkGvSaYcgsLWiAALeAaiemakllGdn
                      Dglien G +DQTYDaW  +G SaYcg+LW+AA   +  ma l G +
   mKIAA1605   676 ---DGLIENGGYADQTYDAWVTTGPSAYCGGLWLAAVAVMVQMAVLCGAQ 722  

                   niadtDLDameiqtaialyeeklekAkeayekkLWNGeYFnnWyDsssde
                    +++             ++ + l  ++eaye+ LWNG+Y+n  yDsss  
   mKIAA1605   723 DVQE-------------RFASILCRGREAYERLLWNGRYYN--YDSSSHP 757  

                   nsksilADQLaGqWYarllGL....ppivdedkiksALesIykyNvmkfk
                   +s+si+ DQ aGqW+ r++GL++++ +++       AL++I+++Nv+ f+
   mKIAA1605   758 QSRSIMSDQCAGQWFLRACGLgegdTEVFPTLHVVRALQTIFELNVQAFA 807  

                   agklGavNgevlpdGkVdgPssvQsrevWpGitYalAAhMiqkGmveeaf
                   +g +GavNg ++p G++d  ssvQs evW G++Y+lAA+Miq+G+  e+f
   mKIAA1605   808 GGAMGAVNG-MHPHGVPDR-SSVQSDEVWVGVVYGLAATMIQEGLTWEGF 855  

                   ktakniyeaiwsngglgyqFqtpegwtavdeityrslhYmrplaiWaikw
                   +ta++ y ++w+   lg++Fqtpe++       +rsl Ymrpl+iWa+++
   mKIAA1605   856 RTAEGCYRTVWER--LGLAFQTPEAYCQQQ--VFRSLAYMRPLSIWAMQL 901  

                   <-*
                      
   mKIAA1605     -     -    

//