hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm02320/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1604  ( 907 res)   mpm02320

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MIF4G    Middle domain of eukaryotic initiation facto   123.9    1.8e-32   1
MA3      Domain in DAP-5, eIF4G, MA-3 and other prote   101.5    9.6e-26   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MIF4G      1/1     166   349 ..     1   227 []   123.9  1.8e-32
MA3        1/1     458   564 ..     1   117 []   101.5  9.6e-26

Alignments of top-scoring domains:
MIF4G: domain 1 of 1, from 166 to 349: score 123.9, E = 1.8e-32
                   *->ekkvnglinkLspdnfeslikellklnndlleeeDPnendkellkel
                       k++nglink++ +n++ +i+ell++n+ +             +  l
   mKIAA1604   166    KKSINGLINKVNISNISIIIQELLQENIVR------------GRGLL 200  

                   ielifekaveepglqDklnfipayArLcalLnaknpdFgsllldrlqeeF
                    +++++++ ++p       f ++yA+L+a++n+k+p++g+l l rl+ +F
   mKIAA1604   201 SRSVLQAQSASP------IFTHVYAALVAIINSKFPQIGELILKRLILNF 244  

                   ekrkddeekeklepkQvicdaeeeeleeleeeeeknrkrrlglvrFlgEL
                   +k                              ++++++ +l   +F ++L
   mKIAA1604   245 RK----------------------------GYRRNDKQLCLTASKFVAHL 266  

                   ynfqvltskiilellkelledltefslecllslLetcGkdLeekspklld
                   +n+ v ++ + le l +lle +t++s e+++ +L+ cG +L+++sp+ ++
   mKIAA1604   267 INQNVAHEVLCLEMLTLLLERPTDDSAEVAIGFLKECGLKLTQVSPRGIN 316  

                   ellerlqdill...lsprlrfmledlielrknk<-*
                    ++erl++il+++++++r+++m+e ++++rk+    
   mKIAA1604   317 AIFERLRNILHeseIDKRVQYMIEVMFAVRKDG    349  

MA3: domain 1 of 1, from 458 to 564: score 101.5, E = 9.6e-26
                   *->lkkkifliikEylssgDtdEAvhclleLklpeefhhevvkvlltlaL
                      ++++i+l+i+++l   D++E++h+ll+++ +e++ +e++ ++l ++ 
   mKIAA1604   458    FRRTIYLAIQSSL---DFEECAHKLLKMEFAESQTKELCNMILDCCA 501  

                   eeatvkrtyremysvLLsrlcqanvistkqfekgFwrllesleDlelDiP
                   ++    rty+++ ++L+ r+c+ ++ + ++fe  F++ ++++++le++  
   mKIAA1604   502 QQ----RTYEKFFGLLAGRFCMLKKEYMESFESIFKEQYDTIHRLETN-- 545  

                   dalrnLaeFlarlisdgiLp<-*
                    +lrn+a+ +a+l+ ++ Lp   
   mKIAA1604   546 -KLRNVAKMFAHLLYTDSLP    564  

//