hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm02320/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1604  ( 907 res)   mpm02320

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
MIF4G      MIF4G domain                                 136.0    6.8e-37   1
MA3        MA3 domain                                    94.2    2.6e-24   1
Sas10_Utp3 Sas10/Utp3 family                           -153.2       0.68   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
MIF4G        1/1     166   349 ..     1   230 []   136.0  6.8e-37
MA3          1/1     458   564 ..     1   116 []    94.2  2.6e-24
Sas10_Utp3   1/1     419   759 ..     1   391 []  -153.2     0.68

Alignments of top-scoring domains:
MIF4G: domain 1 of 1, from 166 to 349: score 136.0, E = 6.8e-37
                   *->lkkvngllnkLsespenfe.iikellklnmsdlreeDennkellksl
                       k++ngl+nk++   +n++ ii+ell++n+ +           ++ l
   mKIAA1604   166    KKSINGLINKVN--ISNISiIIQELLQENIVR----------GRGLL 200  

                   lelifekaveepnfipayArLcalLnsknpgekteFgslllnrlqeeFek
                    +++++++  +p f ++yA+L+a++nsk+p     +g+l l rl+ +F+k
   mKIAA1604   201 SRSVLQAQSASPIFTHVYAALVAIINSKFP----QIGELILKRLILNFRK 246  

                   releaeleeeersdrkrrlglvrFlgELynfqvltekiileilkelledl
                             +r+d++ +l   +F ++L+n+ v +e + le l +lle +
   mKIAA1604   247 --------GYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERP 288  

                   teedlqdqvrdeeslecllllLetiGklLdnsekskklmdeilerlqkil
                   t+          +s e+++ +L+ +G +L+  ++s++ ++ i+erl++il
   mKIAA1604   289 TD----------DSAEVAIGFLKECGLKLT--QVSPRGINAIFERLRNIL 326  

                   lkrdkshvrvesepelssrirfmledlielrknk<-*
                   ++            e+++r+++m+e ++++rk+    
   mKIAA1604   327 HE-----------SEIDKRVQYMIEVMFAVRKDG    349  

MA3: domain 1 of 1, from 458 to 564: score 94.2, E = 2.6e-24
                   *->lkkkiflileEYlssGDtdEAarclleLglpeefhhevVkelivlal
                      ++++i+l ++++l   D++E+a++ll+++ +e++  e++ +++ ++ 
   mKIAA1604   458    FRRTIYLAIQSSL---DFEECAHKLLKMEFAESQTKELCNMILDCCA 501  

                   eeSvkktyremyskLLsrlcqknvistkqfekGFsrllesleDlalDiPd
                   ++   +ty+++ ++L+ r+c++ + + ++fe  F++ ++++++l+++   
   mKIAA1604   502 QQ---RTYEKFFGLLAGRFCMLKKEYMESFESIFKEQYDTIHRLETN--- 545  

                   alrnLaeFvarlisdgiLp<-*
                   +lrn+a+ +a+l+ ++ Lp   
   mKIAA1604   546 KLRNVAKMFAHLLYTDSLP    564  

Sas10_Utp3: domain 1 of 1, from 419 to 759: score -153.2, E = 0.68
                   *->dddDdedddeeeqeeeeelmDdrDggssvqsdadDadvdditslsWG
                      d +  +  deee+eeeee++D++ g +      +   +         
   mKIAA1604   419    DQGAGSSEDEEEEEEEEEGEDEEGGKVTIHDKTE-INLVS------- 457  

                   kkrklYYdT....DFvdkdyGrqseqEmEEeareEEEeAkiiQkrLakal
                    +r  Y   +++ DF        + + +  e +  E    i      +++
   mKIAA1604   458 FRRTIYLAIqsslDFEECAHKLLKMEFA--ESQTKELCNMILDCCAQQRT 505  

                   aeddfllDdadveeeakpvdqeLVDeaeTrvtkdlatklsvkEklkllrk
                    e  f+l    +  +       L    e  +  +      +kE+   ++ 
   mKIAA1604   506 YEKFFGL---LAGRFCM-----L--KKEYMESFESI----FKEQYDTIHR 541  

                   espelveliedfqakltevkdvlkPLlnlVkk.gvIPkgagsqylvlvyn
                        +  +  + a+l   + +   +l+ +k +    +   + + +   +
   mKIAA1604   542 LETNKLRNVAKMFAHLLYTDSLPWSVLECIKLsEETTTSSSRIFVKIFFQ 591  

                   lYlsYcsNiaFyLlLkaRrvdvkghpvierLVdlrnliekLkvRlekkis
                    +  Y      +  L+ R +d    p  e L    n  +     +    s
   mKIAA1604   592 ELCEYMG----LPKLNSRLKDETLQPFFEGLLPRDNPRNTRFA-INFFTS 636  

                   eeidfLl.tnkDdadklevlakAk.rekkkelivKvgdaqaakvnsdadd
                     +  L +++ +++    ++ +A+++e+ + +     +    +  sd+ d
   mKIAA1604   637 IGLGGLTdELREHLKNTPKVIVAQkPEAEQKKTALTSSSSESSSASDSSD 686  

                   ndndddaklkYYKEiEDRqkLKRakkeedsteeqAleeeededaKRaity
                   +d d+                   +++++s +e             a t 
   mKIAA1604   687 SDSDS------------------SESSSESSSESSNS-----SSSSASTQ 713  

                   qiAKNrgltprRkKkKdrnprvKhReKfrkakiRrkgqVReVRrElQrYS
                        +g   +R  k +r   v      ++a+ Rr    Re  rE Qr  
   mKIAA1604   714 SSTSAKGTRKKRQGK-ARGEEVDKLARGHQALERR----REGGREDQRHQ 758  

                   G<-*
                       
   mKIAA1604   759 E    759  

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