hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp01081/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1603  ( 871 res)   mbp01081

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
Dynein_heavy Dynein heavy chain                         874.6   3.1e-259   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Dynein_heavy   1/1     174   869 ..     1   783 []   874.6 3.1e-259

Alignments of top-scoring domains:
Dynein_heavy: domain 1 of 1, from 174 to 869: score 874.6, E = 3.1e-259
                   *->lentypnpkvdwlsdqqWdsiarLseleeFrgLdddleknapdkrWk
                      l++  p+p   w+ d  W ++  Ls+l++F+++ d++ +n+  k W+
   mKIAA1603   174    LKACPPKPS-KWILDMTWLNLVELSKLKQFSDILDQISRNE--KMWR 217  

                   kwydseqPgEeeklPkeWkdeqklsidslkksaFqKLlllRalRPDRlty
                    w+d+e+P Eee+lP  ++         + +  F++Lll+R   PDR+++
   mKIAA1603   218 VWFDKENP-EEEPLPNAYD---------KSLDCFRRLLLIRSWCPDRTIA 257  

                   alrnFveekLpGekfvepdppldlskiyekeSspstPilFiLSPGaDPsk
                    +r+++   + Ge + e+   ldl+k  e eS+p tP+++ LS G+DP+ 
   mKIAA1603   258 QARKYIMDSM-GENYAEG-VILDLEKTWE-ESDPRTPLICLLSMGSDPTD 304  

                   dvekLAkkmGFtfdnGkklhSiSLGQGQgpniAekaIetAaksGhWVlLQ
                   ++ +L+k ++      + + ++S+GQGQ++  A+k++ +   +G WVlLQ
   mKIAA1603   305 SIIALGKRLK------IETRYVSMGQGQEV-HARKLLHQTMANGGWVLLQ 347  

                   NiHLaasWLptLEKkLesltppegtHpdFRLFLTaEpaprPeehIfPigl
                   N+HL +++L +L   + +++    +H  FRL++T+E + +     fPi+l
   mKIAA1603   348 NCHLGLDFLDELMDVVTETET---VHDTFRLWITTEVHKQ-----FPITL 389  

                   LqnSiKiTNEPPtGlKANLlraysnDPIfdqeflemckkpaefkrllFlL
                   Lq+SiK+ NEPP Gl+A L+r+y     ++q+ l+ +     +k++l++ 
   mKIAA1603   390 LQMSIKFANEPPQGLRAGLRRTYGG---VSQDLLDVSVGA-QWKPMLYAV 435  

                   CfFHAVVqERRkFGPlGWNksYEFNesDLriSvdvldnyLeanakGRqNi
                   +f+H++VqERRkFGPlGWN++YEFN++D+   v++++n+L+++       
   mKIAA1603   436 AFLHSTVQERRKFGPLGWNIPYEFNQADFNATVQFIQNHLDDM------- 478  

                   dpdk..vPWeaLRYlfGeimYGGrItDdwDrRLLrtyLeefftpelfdgn
                    + k++v W+++RY++Gei+YGGr+tDd+D+RLL+t+    f + +f + 
   mKIAA1603   479 -DVKkgVSWTTVRYMIGEIQYGGRVTDDYDKRLLNTFAKVWFSENMFGP- 526  

                   adyeLapkidgdlgfavPpntdyeeYieyIeesLPsessPelfGLhpNAE
                    d+ ++       g+ +P  +++++Y++yI+  LP  +sPe+fGLhpNA+
   mKIAA1603   527 -DFTFYQ------GYNIPKCSTVDGYLQYIQS-LPAYDSPEVFGLHPNAD 568  

                   IgfltqeteklirtllelQpreaggeldggsgekvsrkkdssEEvvkqvl
                   I+++ + +++ ++t+l  Qp++++    gg++   +r     E vv  ++
   mKIAA1603   569 ITYQSKLAKDVLDTILGIQPKDSS----GGGD--ETR-----EAVVARLA 607  

                   rdileklpkklCqklFdkeelmlkrt.eeikdPlfvVlvQEiermNkLlk
                   +d leklp     ++    e+++++ + ++ +P++++l+QEi+rm  +l+
   mKIAA1603   608 DDMLEKLP-----EDYSPFEVKERLQkMGPFQPMNIFLRQEIDRMQRVLS 652  

                   eirrSLkeLdlglkGeltmsndlEeliksLlngrVPaWDmWakksyPslk
                    +r +L eL l+  G++ ms++l++ +++++ +r+Pa   W+k s+ s  
   mKIAA1603   653 LVRSTLTELKLAVDGTIIMSENLRDALDCMFDARIPA--RWKKASWVS-S 699  

                   pLgsWvtDLlkRirQLqeWtedsGGAklglPkvvWLsGFFnPQsFLTAim
                   +Lg W+t Ll+R  Q+  W  +      g+P ++W++GFFnPQ FLTA++
   mKIAA1603   700 TLGFWFTELLERNCQFTSWVSN------GRPHCFWMTGFFNPQGFLTAMR 743  

                   QsvARkn.kwPLDkLcLdteVtkkekeeqdskepPedGvyVhGLfLEGAr
                   Q++ R+n++w LD+++L  eVtk+ k+++++  pP++GvyV+GL+LEGA 
   mKIAA1603   744 QEITRANkGWALDNMVLCNEVTKFMKDDISA--PPTEGVYVYGLYLEGAG 791  

                   WDsktgllaeskpKeLfspmPViwlkavpasdkqetkdvyecPVYktkaR
                   WD +++ l+eskpK+Lf  mPVi++ a       +++  y cP Yk   R
   mKIAA1603   792 WDKRNMKLIESKPKVLFELMPVIRIFAENN-TARDPR-LYCCPIYKKPVR 839  

                   ggvLSTTGHStnyvftfnLktkedtpaskWilaGVALllq<-*
                    +        +ny+ +++Lkt++   +++W+l+GVALl++   
   mKIAA1603   840 TD--------LNYIAAVDLKTAQ--APEHWVLRGVALLCD    869  

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