hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mnh/mnh09216/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1597  ( 407 res)   mnh09216

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       Protein kinase C conserved region 2 (CalB)     111.8    7.5e-29   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/2     117   222 ..     1    92 []    65.2  8.5e-15
C2         2/2     266   369 ..     1    92 []    48.1  1.2e-09

Alignments of top-scoring domains:
C2: domain 1 of 2, from 117 to 222: score 65.2, E = 8.5e-15
                   *->tLtvkiisArnLp.........DPYVkvs...........kTkvvkk
                       L+v + ++++L   + ++ ++DPYVk +  +++++ +++kT vvkk
   mKIAA1597   117    ELHVFVAQCKDLAaadvkkqrsDPYVKTYllpdkgkmgkkKTLVVKK 163  

                   tlsgfNPvWnEesetFeFevpp.....s.LeieVyDk......dfiGrvt
                   tl   NPv+nE    + +++ ++  ++++L ++V+++++ +++ f+G+v+
   mKIAA1597   164 TL---NPVYNE---ILRYKIERqflktQkLNLSVWHRdtfkrnSFLGEVE 207  

                   ippnnahqhsadglihlsell.ggrh.kl<-*
                   ++              l++ +   +++k    
   mKIAA1597   208 LD--------------LETWDwDSKQnKQ    222  

C2: domain 2 of 2, from 266 to 369: score 48.1, E = 1.2e-09
                   *->tLtvkiisArnLp.......DPYVkvs...........kTkvvkktl
                       ++++++++ +Lp  ++++ + +Vk +  +++++++++kT+ v kt 
   mKIAA1597   266    EVHIWVKECLDLPllrgshlNSFVKCTilpdtsrksrqKTRAVGKTT 312  

                   sgfNPvWnEesetFeFevpp......s.LeieVyDk.....dfiGrvtip
                      NPv+n+   t++++  ++++  ++ +e++V+D+ + +++f+G ++i+
   mKIAA1597   313 ---NPVFNH---TMVYDGFRpedlmeAcVELTVWDHykltnQFLGGLRIG 356  

                   pnnahqhsadglihlsell.ggrh.kl<-*
                                 + + ++ g    +   
   mKIAA1597   357 --------------FGTGKsYGTEvDW    369  

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