hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/meh/meh01137/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1596  ( 1382 res)   meh01137

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ERCC4    ERCC4 domain                                    23.7    7.4e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ERCC4      1/1    1141  1224 ..     1   105 []    23.7  7.4e-05

Alignments of top-scoring domains:
ERCC4: domain 1 of 1, from 1141 to 1224: score 23.7, E = 7.4e-05
                   *->fiiVDsREfrsilprklDFHDmviekllkkkgakveikqLeVGDYil
                       i+VDsRE+   l+        vi++l +  g+ vei++L   DYi+
   mKIAA1596  1141    CILVDSREITTGLE--------VISSLRTVHGLQVEICPLNGCDYIV 1179 

                   sprkidslevvldvcVERKtidDLisSIidGRLyeQckrLskrEqpykrp
                   s           +++V R + +   s    + + eQ  rL++    + r 
   mKIAA1596  1180 SS----------RMVVVRRSQSEMLSNTSKNKFIEQMQRLQSM---FQRI 1216 

                   vllIEgde<-*
                    +++E d    
   mKIAA1596  1217 CVIVEKDR    1224 

//