hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj03292/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1595  ( 615 res)   mpj03292

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DEXDc    DEAD-like helicases superfamily, catalytic d   185.1    6.7e-51   1
HELICc   helicase superfamily c-terminal domain          98.4    8.2e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DEXDc      1/1      43   260 ..     1   219 []   185.1  6.7e-51
HELICc     1/1     296   378 ..     1    86 []    98.4  8.2e-25

Alignments of top-scoring domains:
DEXDc: domain 1 of 1, from 43 to 260: score 185.1, E = 6.7e-51
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                      gf+ ++p+Q ++ip  ++++dv + a TGsGKTlaf++p+le l+++
   mKIAA1595    43    GFpHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRR 89   

                   kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl
                    ++   k++   ++v++PtreLa+Q+ e+l+ + ++++      +  ++ 
   mKIAA1595    90 EEKL--KKNQVGAIVITPTRELAIQIDEVLSHFTKHFPQ-----FSQILW 132  

                   ygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkg.....lsl.n
                   +gG+++    e+ +++k++  +i+v+TpgrL d+++++  + +     + 
   mKIAA1595   133 IGGrNP---GEDVERFKQHGGNIIVATPGRLEDMFrRKAEgldlaSCVkS 179  

                   ldlvilDEaHrlldmgsggdhgfgdqle.llkrlpknrqrlllSATpp.e
                   ld+++lDEa+rlldm      gf+  ++++l++lpk+r++ l+SAT ++e
   mKIAA1595   180 LDVLVLDEADRLLDM------GFEASINtILEFLPKQRRTGLFSATQTqE 223  

                   ienllklflnlpelfpnpvfisvgf..........tlepieqf<-*
                   +enl +  l+      npv+isv++++   +++ +t+ ++e +   
   mKIAA1595   224 VENLVRAGLR------NPVRISVKEkgvaasstqkTPSRLENH    260  

HELICc: domain 1 of 1, from 296 to 378: score 98.4, E = 8.2e-25
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva
                      +   + L+ llk  ++k++++HG +++ +R +i+ +Frk  + +Lv+
   mKIAA1595   296    EYYGKALEALLK--KVKILCIHG-KMKYKRNKIFMEFRKLQSGILVC 339  

                   TdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-*
                   Tdv++rG+Dip+v++V +yd+p + + +++R GR++R+G   
   mKIAA1595   340 TDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIG    378  

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