hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj03292/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1595  ( 615 res)   mpj03292

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
DEAD       DEAD/DEAH box helicase                       194.2    2.1e-54   1
Helicase_C Helicase conserved C-terminal domain         100.2      4e-26   1
ResIII     Type III restriction enzyme, res subunit     -24.5      0.032   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
ResIII       1/1      45   210 ..     1   244 []   -24.5    0.032
DEAD         1/1      47   227 ..     1   266 []   194.2  2.1e-54
Helicase_C   1/1     303   378 ..     1    76 []   100.2    4e-26

Alignments of top-scoring domains:
ResIII: domain 1 of 1, from 45 to 210: score -24.5, E = 0.032
                   *->iklRpyQeeAierllesiekgelrlatglkdkdkkkrglivmATGsG
                        + p Q   i  +                   k+k +   + TGsG
   mKIAA1595    45    PHMTPVQSATIPLFM------------------KNKDVAAEAVTGSG 73   

                   KTltaakiliarllkkqq.klkhg.riddskvLFlVprkdLleQaleeFt
                   KTl      i+++l  +++klk+++      ++++ p+++L+ Q  e + 
   mKIAA1595    74 KTLAFVI-PILEILLRREeKLKKNqV----GAIVITPTRELAIQIDEVLS 118  

                   kfeskkkkef.knpgvdkklkvltdnqkdsalegkskkndieiifttiQk
                   +f++ +  +++  +++  +          + + + +k +   ii++t  +
   mKIAA1595   119 HFTKHFPQFSqILWIGGRNP---------GEDVERFKQHGGNIIVATPGR 159  

                   Lskalklgkendeeekskstesvvglrlav.esleflldefdliIiDEaH
                   L+   +                    r+a +  l +     d+++ DEa 
   mKIAA1595   160 LEDMFR--------------------RKAEgLDLASCVKSLDVLVLDEAD 189  

                   rssaktksakededatklevyrkilekwelelnkkyfkpaflLGlTATPe
                   r+ +                +++ ++              ++L++   P+
   mKIAA1595   190 RLLDMG--------------FEASIN--------------TILEF--LPK 209  

                   r<-*
                       
   mKIAA1595   210 Q    210  

DEAD: domain 1 of 1, from 47 to 227: score 194.2, E = 2.1e-54
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->ptpiQaeaipaileneGfalredvlssggmdrlvlqApTGSGKTlaf
                      +tp+Q+++ip+++  ++   + dv         +  A TGSGKTlaf
   mKIAA1595    47    MTPVQSATIPLFM--KN---K-DVA--------A-EAVTGSGKTLAF 78   

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   llPilygqrllkgpksarggksqgggknergfkidspqalvlaPTreLae
                   ++Pil  + ll+++++ +++                + a+v++PTreLa 
   mKIAA1595    79 VIPIL--EILLRREEKLKKNQ---------------VGAIVITPTRELAI 111  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   QiyeelkkllkilalsplgvnellrrigtglrvavlslyGGsslkdqldk
                   Qi e+l+ ++k                 +  +   + ++GG + +++ ++
   mKIAA1595   112 QIDEVLSHFTK-----------------HFPQFSQILWIGGRNPGEDVER 144  

                RF x xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxx
                   l.rgkreskggpdIvvgTPgrLldllrngrinikievssertgkl.klkn
                    ++       g +I+v+TPgrL d++r++            ++ l+  + 
   mKIAA1595   145 FkQH------GGNIIVATPGRLEDMFRRK------------AEGLdLASC 176  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   lkhlkllVlDEahrlldmghgFgedleeilrrlprneplraqllgtilHq
                   +k l  lVlDEa+rlldm  gF+ ++  il+ lp+   +r          
   mKIAA1595   177 VKSLDVLVLDEADRLLDM--GFEASINTILEFLPK---QR---------- 211  

                RF xxxxxxxxxxxxxxxxxxxxx   
                   kpniQtllfSATlpprevedl<-*
                       +t lfSAT  ++eve+l   
   mKIAA1595   212 ----RTGLFSATQ-TQEVENL    227  

Helicase_C: domain 1 of 1, from 303 to 378: score 100.2, E = 4e-26
                   *->ll.epgikvarlhGglsqeeReeilekFrsgkskvLvaTdvaarGlD
                      +  ++++k++++hG +++ +R +i+ +Fr+  s +Lv+Tdv+arG+D
   mKIAA1595   303    EAlLKKVKILCIHG-KMKYKRNKIFMEFRKLQSGILVCTDVMARGID 348  

                   ipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   ip+vn+V +yd+p n + +++R+GR++R+G   
   mKIAA1595   349 IPEVNWVLQYDPPSNASAFVHRCGRTARIG    378  

//