hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mib/mib19004/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1594 ( 907 res) mib19004 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- UCH Ubiquitin carboxyl-terminal hydrolase 297.5 1.6e-85 1 UIM Ubiquitin interaction motif 46.7 5.3e-10 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- UIM 1/3 631 648 .. 1 18 [] 14.7 1.8 UIM 2/3 733 750 .. 1 18 [] 20.8 0.032 UIM 3/3 755 772 .. 1 18 [] 23.9 0.0037 UCH 1/1 288 876 .. 1 273 [] 297.5 1.6e-85 Alignments of top-scoring domains: UIM: domain 1 of 3, from 631 to 648: score 14.7, E = 1.8 *->mdEEedLqlALalSlqea<-* m+EEe L+ L+ S+ ea mKIAA1594 631 MSEEEVLAAVLEISRREA 648 UIM: domain 2 of 3, from 733 to 750: score 20.8, E = 0.032 *->mdEEedLqlALalSlqea<-* + EE++Lq+ALa+Slqe+ mKIAA1594 733 EREEQELQQALAQSLQEQ 750 UIM: domain 3 of 3, from 755 to 772: score 23.9, E = 0.0037 *->mdEEedLqlALalSlqea<-* +E++dL++A +lSlqe+ mKIAA1594 755 QKEDDDLKRATELSLQEF 772 UCH: domain 1 of 1, from 288 to 876: score 297.5, E = 1.6e-85 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfhipplrdyllsdsyeseinesnpl +++ G+ NlGNTCYmN++LQ+Lf+ ++++++ll++ ++ mKIAA1594 288 QQLQGFSNLGNTCYMNAILQSLFSLQSFANDLLKQ----------SI 324 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxx xxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvvpsplkfl.qfkttlgkineefsgy ++k++ +al + f++l+ +++ + + +++++l+++k+ ++ +e fsgy mKIAA1594 325 PWKKIPFNALIRRFANLLIKkDICNSETKKELLkKVKNAISATAERFSGY 374 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx xxxxxxx mQqDAhEFllfLLdgLhedlnrvnkkpytepesdkrpd.kaa.eawknhs Q+DAhEFl+++Ld+L ed++++nk ++tep + ++++++ + + mKIAA1594 375 VQNDAHEFLSQCLDQLKEDMEKLNKTWKTEP------VlGEEnLPDTSAT 418 RF xxxxxxxxxxxxxxxxx lrneslitdlFqGqles................................. + ++++ +++++++ + ++ ++++ +++++ ++ + + ++++++ ++ mKIAA1594 419 KVFTCPVITNLEFEVQHsiickacgetipkreqfndlsidlprrkkplpp 468 RF xxxxxxxxxxxxxxxxxxxx ..............................rlkisrLPpiLiihLKRFky ++ +++ + + ++ + +++++++++ r+k+ rLP +Li+hLKR+++ mKIAA1594 469 rsiqdsldlffraeeleyscekcggkcalvRHKFNRLPRVLILHLKRYSF 518 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxx dgetgmnkKindkVefPleLdlssyctae..................... + +++n+K+ ++V +P++L+l s+ct +++++ + + + + + + ++ mKIAA1594 519 NVALSLNNKLGQQVIIPRFLTLASHCTEStkppvtlgwsapvamkftfks 568 RF .................................................. +++ ++ +++++++ + + ++ + +++++ +++ +++ + ++ mKIAA1594 569 kssvtscldsdsedelkrsvvlsqrlcdlpgneqyqedvekdlklcrlep 618 RF .................................................. ++ + ++++ + ++++ + + + ++ +++++++++++++++ mKIAA1594 619 gkaelensgfdrmseeevlaavleisrreaspvlspedddkptsspdtgf 668 RF .................................................. +++ ++ +++++ + +++++ +++++ + ++ +++ ++++++++++++ mKIAA1594 669 aeddipempenpdameieksktitepgpasfteitkdcdenkenktpegs 718 RF .................................................. +++ + ++ + + + ++++ ++ ++ ++++ +++++++ + ++ + mKIAA1594 719 qgevdwlqqydvdrereeqelqqalaqslqeqeaweqkedddlkratels 768 RF xxxxxx ............................................pplkYe ++ +++ ++ ++++++++++ + + ++ + ++ + + +++ p+ Y+ mKIAA1594 769 lqefnnsfldslgsdedsgnedvfdmeyteaeaeelkrnaetgaLPHSYR 818 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx x LyaVvvHsGsslsgGHYiayikkkkknnkWykfDDekVsevseeevle.r L++Vv+H+Gs++s+GHYi++++ ++k++ W++++D Vs ++e +v+++r mKIAA1594 819 LISVVSHIGSTSSSGHYISDVY-DIKKQAWFTYNDLEVSKIQEAAVQSdR 867 RF xxxxxxxxx sssAYiLFY<-* +s+Yi FY mKIAA1594 868 DRSGYIFFY 876 //