hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh04724/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1589  ( 775 res)   mbh04724

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
FYVE     Protein present in Fab1, YOTB, Vac1, and EEA    99.6    3.6e-25   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FYVE       1/2     591   661 ..     1    81 []    57.3    2e-12
FYVE       2/2     705   774 ..     1    81 []    50.2  2.7e-10

Alignments of top-scoring domains:
FYVE: domain 1 of 2, from 591 to 661: score 57.3, E = 2e-12
                   *->etaphWvpDeeasnClmnCgkeFtlvtrRrHHCRnCGrifCskCssk
                         ++W p +   +C   C ++F    + +HHCR+CG  fC++Cssk
   mKIAA1589   591    IAPAYWRPNSQILSC-NQCATSFKD-NDTKHHCRACGEGFCDSCSSK 635  

                   kaplpklgkekkngknedftpvRVCdsCyerlsk<-*
                   + p+p  g          + pvRVCdsCy+ ++    
   mKIAA1589   636 TRPVPERGWG--------PAPVRVCDSCYDARNV    661  

FYVE: domain 2 of 2, from 705 to 774: score 50.2, E = 2.7e-10
                   *->etaphWvpDeeasnClmnCgkeFtlvtrRrHHCRnCGrifCskCssk
                       + ++WvpD+e  +C +nC+keF++    +HHCR+CG+ fC+ Cs+ 
   mKIAA1589   705    ARPAYWVPDHEILHC-HNCRKEFSV-KLSKHHCRACGQGFCDECSHD 749  

                   kaplpklgkekkngknedftpvRVCdsCyerlsk<-*
                      +p+ g            pvRVC  C+ +      
   mKIAA1589   750 CRAVPSRGWDH---------PVRVCFNCNKKPGD    774  

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