hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbp/mbp00262/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1588 ( 617 res) mbp00262 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ZnF_C2H2 zinc finger 267.1 1.3e-75 13 KRAB krueppel associated box 121.4 1e-31 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- KRAB 1/1 70 130 .. 1 62 [] 121.4 1e-31 ZnF_C2H2 1/13 233 255 .. 1 23 [] 23.1 0.04 ZnF_C2H2 2/13 261 283 .. 1 23 [] 27.8 0.0015 ZnF_C2H2 3/13 289 311 .. 1 23 [] 26.1 0.005 ZnF_C2H2 4/13 317 339 .. 1 23 [] 23.7 0.025 ZnF_C2H2 5/13 345 367 .. 1 23 [] 27.7 0.0016 ZnF_C2H2 6/13 373 395 .. 1 23 [] 27.5 0.0018 ZnF_C2H2 7/13 401 423 .. 1 23 [] 30.1 0.0003 ZnF_C2H2 8/13 429 451 .. 1 23 [] 25.4 0.0081 ZnF_C2H2 9/13 457 479 .. 1 23 [] 22.2 0.074 ZnF_C2H2 10/13 485 507 .. 1 23 [] 25.0 0.01 ZnF_C2H2 11/13 513 535 .. 1 23 [] 27.2 0.0022 ZnF_C2H2 12/13 541 563 .. 1 23 [] 24.7 0.013 ZnF_C2H2 13/13 569 591 .. 1 23 [] 29.8 0.00038 Alignments of top-scoring domains: KRAB: domain 1 of 1, from 70 to 130: score 121.4, E = 1e-31 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk VtF D+AVdF+++EW +LD++Qr LY+dVMlENYsnL SLG +qv k mKIAA1588 70 VTFQDIAVDFTEKEWPLLDSSQRKLYKDVMLENYSNLSSLG-YQVGK 115 pdliskLEqgeEpwi<-* p+lis LEq+e + + mKIAA1588 116 PRLISHLEQEEDLRM 130 ZnF_C2H2: domain 1 of 13, from 233 to 255: score 23.1, E = 0.04 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C+k f++ +L+rH r+H mKIAA1588 233 HKCHQ-CQKAFTTSaSLTRHHRIH 255 ZnF_C2H2: domain 2 of 13, from 261 to 283: score 27.8, E = 0.0015 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ Cgk f++++aL+ H r+H mKIAA1588 261 YECSS-CGKAFNDPsALRSHTRTH 283 ZnF_C2H2: domain 3 of 13, from 289 to 311: score 26.1, E = 0.005 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ C+ f++ +aLk HmrvH mKIAA1588 289 FDCSQ-CSNAFRTLsALKIHMRVH 311 ZnF_C2H2: domain 4 of 13, from 317 to 339: score 23.7, E = 0.025 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk + + +L+ H r+H mKIAA1588 317 YKCDE-CGKAYGRScHLIAHKRTH 339 ZnF_C2H2: domain 5 of 13, from 345 to 367: score 27.7, E = 0.0016 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ Cgk f ++++Lk+H+r H mKIAA1588 345 YECQD-CGKAFQHPsHLKEHVRNH 367 ZnF_C2H2: domain 6 of 13, from 373 to 395: score 27.5, E = 0.0018 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f++k++++ H + H mKIAA1588 373 YECTQ-CGKAFRWKsNFNLHKKNH 395 ZnF_C2H2: domain 7 of 13, from 401 to 423: score 30.1, E = 0.0003 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgksfs+ + ++Hmr+H mKIAA1588 401 YECKE-CGKSFSDLlSRRKHMRIH 423 ZnF_C2H2: domain 8 of 13, from 429 to 451: score 25.4, E = 0.0081 *->ykCpigCgksfssk.aLkrHmrvH<-* +C++ Cgk+f++++ Lk Hm +H mKIAA1588 429 VECHQ-CGKTFRNQsILKTHMNSH 451 ZnF_C2H2: domain 9 of 13, from 457 to 479: score 22.2, E = 0.074 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk fs ++L+ H ++H mKIAA1588 457 YGCDL-CGKAFSASsNLTAHRKIH 479 [output cut off at A = 10 top alignments] //