hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp00262/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1588  ( 617 res)   mbp00262

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         316.0    4.5e-91  13
KRAB     KRAB box                                        92.1    1.1e-23   1
FYVE     FYVE zinc finger                               -19.1       0.81   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KRAB       1/1      70   110 ..     1    41 []    92.1  1.1e-23
zf-C2H2    1/13    233   255 ..     1    24 []    28.3  0.00017
zf-C2H2    2/13    261   283 ..     1    24 []    35.3  1.4e-06
zf-C2H2    3/13    289   311 ..     1    24 []    28.0  0.00022
zf-C2H2    4/13    317   339 ..     1    24 []    29.4  8.2e-05
zf-C2H2    5/13    345   367 ..     1    24 []    34.1  3.1e-06
zf-C2H2    6/13    373   395 ..     1    24 []    31.2  2.3e-05
zf-C2H2    7/13    401   423 ..     1    24 []    31.0  2.7e-05
zf-C2H2    8/13    429   451 ..     1    24 []    26.8  0.00052
zf-C2H2    9/13    457   479 ..     1    24 []    30.6  3.5e-05
zf-C2H2   10/13    485   507 ..     1    24 []    22.4    0.011
zf-C2H2   11/13    513   535 ..     1    24 []    30.8  3.2e-05
FYVE       1/1     479   552 ..     1    77 []   -19.1     0.81
zf-C2H2   12/13    541   563 ..     1    24 []    31.7  1.7e-05
zf-C2H2   13/13    569   591 ..     1    24 []    35.6  1.1e-06

Alignments of top-scoring domains:
KRAB: domain 1 of 1, from 70 to 110: score 92.1, E = 1.1e-23
                   *->VtFeDVAVdFtqEEWglLdpaQrnLYrdVMlENyrnLvSlg<-*
                      VtF+D+AVdFt++EW lLd++Qr+LY+dVMlENy+nL Slg   
   mKIAA1588    70    VTFQDIAVDFTEKEWPLLDSSQRKLYKDVMLENYSNLSSLG    110  

zf-C2H2: domain 1 of 13, from 233 to 255: score 28.3, E = 0.00017
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +C+k+F+++++L+rH r+H   
   mKIAA1588   233    HKCH-QCQKAFTTSASLTRHHRIH    255  

zf-C2H2: domain 2 of 13, from 261 to 283: score 35.3, E = 1.4e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+  Cgk+F+++s L++H rtH   
   mKIAA1588   261    YECS-SCGKAFNDPSALRSHTRTH    283  

zf-C2H2: domain 3 of 13, from 289 to 311: score 28.0, E = 0.00022
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +C  +F++ s Lk H+r+H   
   mKIAA1588   289    FDCS-QCSNAFRTLSALKIHMRVH    311  

zf-C2H2: domain 4 of 13, from 317 to 339: score 29.4, E = 8.2e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cgk++ r+ +L +H+rtH   
   mKIAA1588   317    YKCD-ECGKAYGRSCHLIAHKRTH    339  

zf-C2H2: domain 5 of 13, from 345 to 367: score 34.1, E = 3.1e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ dCgk+F ++s+Lk H r H   
   mKIAA1588   345    YECQ-DCGKAFQHPSHLKEHVRNH    367  

zf-C2H2: domain 6 of 13, from 373 to 395: score 31.2, E = 2.3e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F+ ksn++ H++ H   
   mKIAA1588   373    YECT-QCGKAFRWKSNFNLHKKNH    395  

zf-C2H2: domain 7 of 13, from 401 to 423: score 31.0, E = 2.7e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +CgksFs+  + ++H+r+H   
   mKIAA1588   401    YECK-ECGKSFSDLLSRRKHMRIH    423  

zf-C2H2: domain 8 of 13, from 429 to 451: score 26.8, E = 0.00052
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +C+ +Cgk+F+++s Lk+H+++H   
   mKIAA1588   429    VECH-QCGKTFRNQSILKTHMNSH    451  

zf-C2H2: domain 9 of 13, from 457 to 479: score 30.6, E = 3.5e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+  Cgk+Fs +snL++H+++H   
   mKIAA1588   457    YGCD-LCGKAFSASSNLTAHRKIH    479  

zf-C2H2: domain 10 of 13, from 485 to 507: score 22.4, E = 0.011
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+  Cgk+F +  + +rH+ +H   
   mKIAA1588   485    YECT-SCGKVFGDYLSRRRHMSIH    507  

zf-C2H2: domain 11 of 13, from 513 to 535: score 30.8, E = 3.2e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                        C  +Cgk+F+++s+Lk+H+r+H   
   mKIAA1588   513    VDCR-QCGKAFRNQSTLKTHMRSH    535  

FYVE: domain 1 of 1, from 479 to 552: score -19.1, E = 0.81
                   *->phWvpDeevsnCmrCgkpFtkltkRrHH...........CRaCGrif
                      ++     e   C++Cgk F+  + Rr+H + +  +++ +CR+CG+ f
   mKIAA1588   479    HTQERHYE---CTSCGKVFGDYLSRRRHmsihlvkkrvdCRQCGKAF 522  

                   CgsCssktvllpylgiaallkndviekpvRVCdsCydrlnk<-*
                    ++ + kt    + g          ekp+  Cd+C    +    
   mKIAA1588   523 RNQSTLKTHMRSHTG----------EKPYE-CDHCGKAFSI    552  

zf-C2H2: domain 12 of 13, from 541 to 563: score 31.7, E = 1.7e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+Fs  snL+ H+r+H   
   mKIAA1588   541    YECD-HCGKAFSIGSNLNVHRRIH    563  

zf-C2H2: domain 13 of 13, from 569 to 591: score 35.6, E = 1.1e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C  +Cgk+Fs++s+L++H +tH   
   mKIAA1588   569    YECL-ICGKAFSDHSSLRSHVKTH    591  

//