hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm12072/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1584  ( 746 res)   mpm12072

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     56.2    4.3e-12  10

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/10    247   267 ..     1    23 []     1.1  2.3e+02
ZnF_C2H2   2/10    327   349 ..     1    23 []    14.9      6.6
ZnF_C2H2   3/10    364   387 ..     1    23 []    13.3       10
ZnF_C2H2   4/10    394   417 ..     1    23 []    22.7    0.051
ZnF_C2H2   5/10    424   447 ..     1    23 []    16.7      3.2
ZnF_C2H2   6/10    453   475 ..     1    23 []    11.5       16
ZnF_C2H2   7/10    481   503 ..     1    23 []    18.1      1.2
ZnF_C2H2   8/10    629   648 ..     1    23 []     0.5  2.8e+02
ZnF_C2H2   9/10    649   671 ..     1    23 []    17.5      1.9
ZnF_C2H2  10/10    694   721 ..     1    23 []     0.4  2.8e+02

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 10, from 247 to 267: score 1.1, E = 2.3e+02
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                        Cp+ C+ +f+  + Lk Hm+     
   mKIAA1584   247    RSCPK-CNVKFRLLdPLKCHMK--    267  

ZnF_C2H2: domain 2 of 10, from 327 to 349: score 14.9, E = 6.6
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC   C k+ ++   + +Hm+ H   
   mKIAA1584   327    FKCFS-CTKVLKNNiRFMNHMKHH    349  

ZnF_C2H2: domain 3 of 10, from 364 to 387: score 13.3, E = 10
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                       +C++ C ++++++ +L+ H+ ++H   
   mKIAA1584   364    TTCQH-CYRQYPNPfQLQCHIEsTH    387  

ZnF_C2H2: domain 4 of 10, from 394 to 417: score 22.7, E = 0.051
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                        C+i C  sf +++ L +Hm+++H   
   mKIAA1584   394    TICKI-CELSFETEhMLLQHMKdTH    417  

ZnF_C2H2: domain 5 of 10, from 424 to 447: score 16.7, E = 3.2
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y C++ C+++ s  ++ + H r++H   
   mKIAA1584   424    YICQV-CQFRSSIFsDVETHFRsSH    447  

ZnF_C2H2: domain 6 of 10, from 453 to 475: score 11.5, E = 16
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + Cp+ C k+ + ++ + +H+++H   
   mKIAA1584   453    LLCPF-CLKVSRMAtPYMNHYMRH    475  

ZnF_C2H2: domain 7 of 10, from 481 to 503: score 18.1, E = 1.2
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+Cp+ C  +f + ++ ++H   H   
   mKIAA1584   481    YRCPK-CRLQFLTSkEKTEHKLEH    503  

ZnF_C2H2: domain 8 of 10, from 629 to 648: score 0.5, E = 2.8e+02
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C + C    s  +++  H  +H   
   mKIAA1584   629    HMCIE-CR---SKIkDFSSHFSTH    648  

ZnF_C2H2: domain 9 of 10, from 649 to 671: score 17.5, E = 1.9
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                        C++ C+++++  +a+++Hm +H   
   mKIAA1584   649    INCDF-CKYTTNCNkAFTNHMSSH    671  

ZnF_C2H2: domain 10 of 10, from 694 to 721: score 0.4, E = 2.8e+02
                   *->ykCpigCg..ksfssk.aLkrHmr...vH<-*
                      ++C + C+    +s  + + +H+ ++++H   
   mKIAA1584   694    LVCLK-CDflADTSGLdRMAKHLNqrkTH    721  

	[output cut off at A = 10 top alignments]
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