hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm12072/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1584  ( 746 res)   mpm12072

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          50.5    3.7e-11   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/8     247   269 ..     1    24 []    10.3      9.9
zf-C2H2    2/8     327   349 ..     1    24 []    13.2      5.2
zf-C2H2    3/8     364   387 ..     1    24 []    14.2        3
zf-C2H2    4/8     394   417 ..     1    24 []    18.1     0.21
zf-C2H2    5/8     424   447 ..     1    24 []    11.7      7.3
zf-C2H2    6/8     453   475 ..     1    24 []     8.2       16
zf-C2H2    7/8     481   503 ..     1    24 []    15.0      1.8
zf-C2H2    8/8     649   671 ..     1    24 []     9.1       13

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 8, from 247 to 269: score 10.3, E = 9.9
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +Cp +C+ +F+  + Lk H++++   
   mKIAA1584   247    RSCP-KCNVKFRLLDPLKCHMKRC    269  

zf-C2H2: domain 2 of 8, from 327 to 349: score 13.2, E = 5.2
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC   C k+ +++  + +H++ H   
   mKIAA1584   327    FKCF-SCTKVLKNNIRFMNHMKHH    349  

zf-C2H2: domain 3 of 8, from 364 to 387: score 14.2, E = 3
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       +C+ +C + + ++ +L+ H+ ++H   
   mKIAA1584   364    TTCQ-HCYRQYPNPFQLQCHIEStH    387  

zf-C2H2: domain 4 of 8, from 394 to 417: score 18.1, E = 0.21
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                        C+ +C  sF + + L +H++ +H   
   mKIAA1584   394    TICK-ICELSFETEHMLLQHMKDtH    417  

zf-C2H2: domain 5 of 8, from 424 to 447: score 11.7, E = 7.3
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y C+ +C+ + s  s+ ++H r++H   
   mKIAA1584   424    YICQ-VCQFRSSIFSDVETHFRSsH    447  

zf-C2H2: domain 6 of 8, from 453 to 475: score 8.2, E = 16
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                        Cp  C k+ +    + +H ++H   
   mKIAA1584   453    LLCP-FCLKVSRMATPYMNHYMRH    475  

zf-C2H2: domain 7 of 8, from 481 to 503: score 15.0, E = 1.8
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+Cp +C   F ++++ + H+  H   
   mKIAA1584   481    YRCP-KCRLQFLTSKEKTEHKLEH    503  

zf-C2H2: domain 8 of 8, from 649 to 671: score 9.1, E = 13
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                        C+  C+++ + ++ +++H+ +H   
   mKIAA1584   649    INCD-FCKYTTNCNKAFTNHMSSH    671  

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